Detailed information on CNT30682017


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504983Triticum urartuNicotiana attenuata47.0420.9298.69381forward
CNT30553653Triticum urartuOryza glaberrima30.6212.7597.98248forward
CNT30721611Triticum urartuTriticum spelta27.6548.5999.55224reverse complement
CNT30154718Triticum urartuPrunus persica57.967.6893.39469forward
CNT30147862Triticum urartuBrachypodium distachyon17.7854.7598.61144reverse complement

Expression of CNT30682017

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQVGRCFWGAGQKEKRLLAKVVSPCFKTTGRTLRL*

>peptide 2 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 3 (44 aa)
MLSKPIHLSETEESGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAE

>peptide 4 (40 aa)
MTGLEEEAPANSVPAAAVRRGGQVFFGMTGRKGHVGGESG*

>peptide 5 (29 aa)
MTSSPHGPYGLGHTRATMAMTMGSKAVRRS

Sequence

>CNT30682017
TCATAGTCAAAATCTGAGTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGGTCGTTGTTTTTGGGGAGCTGGGCAGAAG
GAAAAGAGGCTCCTAGCTAAAGTTGTCTCGCCCTGCTTCAAAACTACAGGGCGCACGCTACGGCTTTGACCTAACGGCCTCCGTTTGCTGGAATCAGAAT
AGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTCAAAAGCGATGTTTGATGAGC
CTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGACAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGC
CCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAA
AGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCT
TCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAG
TGAGACAGAGGAGAGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGT
AAGGCGGAGC