Detailed information on CNT30681876


BLAST search results

BLAST vs Swiss-Prot:
sp|P12653|GSTF1_MAIZE, E-value = 7e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675196Triticum urartuSetaria viridis16.0936.4385.35157forward
CNT30522744Triticum urartuSetaria italica32.9927.8382.61322forward
CNT30293056Triticum urartuTriticum aestivum18.6561.6994.51182forward
CNT3014272Triticum urartuZea mays15.5741.6482.89152forward
CNT30363688Triticum urartuSorghum bicolor16.2925.2884.28159forward
CNT30369272Triticum urartuOryza glumipatula16.2925.1684.28159forward
CNT3099627Triticum urartuOryza rufipogon15.9832.583.33156forward
CNT30497720Triticum urartuDigitaria exilis19.3630.6381.48189forward
CNT30594623Triticum urartuEragrostis curvula12.0943.3887.29118forward

Expression of CNT30681876

Peptides detected in this lncRNA

>peptide 1 (92 aa)
NLWAQFIIKPEHRNAHFSTRSRQDRKHKPEHSTRGDITRTHTRTGTHRGKHTSAYFATNERQKLRSWLHQRSNLLDGRPSHAGTRRTETRRV*

>peptide 2 (63 aa)
ISGHNLLLNQSIGMLISVQDLDRIASTSLNIQHEETSQEHTLGQAHIGGNTPRLISRPTSARN*

>peptide 3 (30 aa)
MSPSFNSSGLLLRHAYLQIARDSSTKRKTK*

>peptide 4 (97 aa)
MRVRVEQRRVGCSRQAQGDRHMVKVRKTEEVSSQVLGLAQVRLVHRQHVLDLNKVSIDDRLVSGSPKHRMDKALEENGAQRGGVLMGLHLEPHIHHS*

Sequence

>CNT30681876
TAATCTCTGGGCACAATTTATTATTAAACCAGAGCATAGGAATGCTCATTTCAGTACAAGATCTAGACAGGATCGCAAGCACAAGCCTGAACATTCAACA
CGAGGAGACATCACAAGAACACACACTCGGACAGGCACACATCGGGGGAAACACACCTCGGCTTATTTCGCGACCAACGAGCGCCAGAAACTAAGATCAT
GGCTTCATCAGCGCAGCAACCTTCTGGACGGACGGCCTTCACATGCGGGTACGCGTCGAACAGAGACGCGTAGGGTGTAGCCGCCAAGCACAGGGTGACA
GACACATGGTTAAGGTCCGCAAGACTGAGGAAGTCTCCAGCCAGGTACTTGGACTTGCTCAGGTGCGCCTCGTACACCGCCAGCACGTTCTTGATCTTAA
CAAGGTTAGCATCGATGACCGTCTGGTCAGTGGCTCCCCCAAGCATAGGATGGATAAGGCACTCGAAGAGAATGGGGCTCAGCGCGGCGGTGTACTGATG
GGCCTCCACCTCGAGCCACACATCCACCATAGCTGACTCCTTGATGTCGCCCTCCTTCAACAGCTCTGGCTTGCTCTTGCGGCACGCATACTTGCAAATA
GCACGTGATTCTAGTACGAAGAGAAAAACAAAATAGAACCAGAGTTATGAGGATTCTAAAGGGAGTATGGTACTGTTTTATTCCATTTCAATAAATCGGT
CTAAAACTAGTAAAATGATCATTTCTAAACTTGATAAGATATCAAATTAGAACTCATAAGCATAGACTATATGATTGTTTGGGAAACCTTACCATAACTC
ATGTTTTTGTCTTCCGACCAAGCTTGTGGTTGTTAACTAATTATTACCTCATCATTCAAAACTCAAGCTTCAAGCATACCAGGATAGTGGATTAAAACTC
CAAACGGTATAACTCCTAATATAATGCCAGGCGACAGCTAACAATTAACATTGTTTTTTACTCATGTCATCACATA