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Detailed information on CNT30681848


BLAST search results

BLAST vs Swiss-Prot:
sp|P93176|TBB_HORVU, E-value = 5e-133

BLAST vs NONCODE:
NONBNAT007651, E-value = 3e-101

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Triticum urartuOryza sativa30.8547.6487.55273forward
CNT30675224Triticum urartuSetaria viridis56.7260.4191.83502forward
CNT30522155Triticum urartuSetaria italica35.8236.0688.33317forward
CNT30641079Triticum urartuNymphaea colorata40.948.7286.19362forward
CNT30534291Triticum urartuEucalyptus grandis27.3437.9980.58242forward
CNT30516889Triticum urartuJuglans regia30.0643.9784.59266forward
CNT30377201Triticum urartuArabidopsis thaliana42.665.9185.41377forward
CNT30617295Triticum urartuSesamum indicum19.6642.4486.78174forward
CNT30728062Triticum urartuCorchorus capsularis45.9946.7384.52407forward
CNT30381383Triticum urartuManihot esculenta33.2216.7385.03294forward
CNT30402401Triticum urartuBeta vulgaris33.7925.1786.29299forward
CNT30629386Triticum urartuVigna unguiculata16.1655.4384.62143forward
CNT30196370Triticum urartuPisum sativum40.937.9985.08362forward
CNT30486254Triticum urartuOlea europaea20.948.387.03185forward
CNT30708222Triticum urartuGlycine max33.5673.783.5297forward
CNT3092760Triticum urartuSolanum tuberosum38.3148.9982.3339forward
CNT30291318Triticum urartuTriticum aestivum29.1577.4899.22258forward
CNT30223001Triticum urartuHordeum vulgare17.1854.6897.37152forward
CNT30390564Triticum urartuTriticum turgidum15.2544.4198.52135forward
CNT30567082Triticum urartuActinidia chinensis33.6767.7386.58298forward
CNT30586804Triticum urartuMusa acuminata26.2130.0586.64232forward
CNT30542792Triticum urartuBrassica napus30.1761.5285.77267forward
CNT30511260Triticum urartuSolanum lycopersicum12.7728.0491.15113forward
CNT30553024Triticum urartuOryza glaberrima40.5625.1486.07359forward
CNT30442409Triticum urartuAegilops tauschii41.0254.1885.67363forward
CNT30252641Triticum urartuAvena sativa57.0662.1285.35505forward
CNT30261872Triticum urartuBrassica rapa61.5861.5883.85545forward
CNT30614070Triticum urartuArabis alpina39.5525.3386.57350forward
CNT3015387Triticum urartuZea mays36.1619.7885.31320forward
CNT3041960Triticum urartuChlamydomonas reinhardtii15.7140.7687.77139forward
CNT30608822Triticum urartuGossypium raimondii44.9759.481.66398forward
CNT30203517Triticum urartuHelianthus annuus63.1649.7383.01559forward
CNT30627268Triticum urartuDaucus carota46.7833.4481.64414forward
CNT30722476Triticum urartuTriticum spelta45.8860.6984.24406forward
CNT30341625Triticum urartuEragrostis tef61.5855.983.85545forward
CNT30368415Triticum urartuSorghum bicolor36.1631.186.25320forward
CNT30595966Triticum urartuOryza meridionalis28.3640.9588.05251forward
CNT30369403Triticum urartuOryza glumipatula42.7157.5391.27378forward
CNT30422340Triticum urartuPapaver somniferum28.1429.481.93249forward
CNT30570854Triticum urartuVitis vinifera16.9574.6384.67150forward
CNT30706519Triticum urartuPrunus avium50.7354.1681.74449forward
CNT3033661Triticum urartuTheobroma cacao22.4995.6783.42199forward
CNT3054138Triticum urartuAmborella trichopoda22.639.4583200forward
CNT3024558Triticum urartuPopulus trichocarpa62.3730.2584.42552forward
CNT30322043Triticum urartuAsparagus officinalis62.2665.8385.3551forward
CNT30119164Triticum urartuCitrus clementina26.335083.69233forward
CNT3036150Triticum urartuCucumis melo9.3824.6389.1683forward
CNT30330123Triticum urartuDioscorea rotundata37.5132.6187.35332forward
CNT3099978Triticum urartuOryza rufipogon39.5543.2188350forward
CNT30575061Triticum urartuOryza barthii47.9146.6491.51424forward
CNT30117026Triticum urartuOryza nivara27.1235.7190240forward
CNT30333708Triticum urartuCynara cardunculus42.7146.6785.19378forward
CNT3049477Triticum urartuCucumis sativus9.9430.9990.9188forward

Expression of CNT30681848

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MQESLPPEHGSELLAHPPEHLLDGGRVANEGGRHGEPCRWDVTDAGLDIVGDPLHKVG*

>peptide 2 (53 aa)
PYVGTIIPCIQSDEIICKKYQLRSHSPPERSRNLNTEHTGWHQVIQYRKGAIT*

>peptide 3 (72 aa)
MASSDTIPKRCHNMRNTKLRKGMKNGGGVQAVVAMINRFITKHQTDQTLPPEPPTQQSTTWTSHLTCPPQPQ*

>peptide 4 (67 aa)
MARIGGAHHVLGIPHLLCELWDSEGTVLLRPTGCQWSEAHHEEVEAGEWDKVHCQLPEVGIQLTREP*

>peptide 5 (81 aa)
MDLPPYMSSSASVNSISSMPSPVYQCKKAFLLNMAVNCSLTLRNISWMEVELPTKVDAMESPVGGMSQTLDLTLLGIHSTK*

Sequence

>CNT30681848
TCCGTATGTTGGAACCATTATACCCTGCATACAGTCTGACGAAATAATTTGCAAGAAATACCAACTCAGAAGCCATTCACCACCAGAGAGGTCCAGAAAC
CTCAACACAGAACATACCGGATGGCATCAAGTGATACAATACCGAAAAGGTGCCATAACATGAGAAATACAAAGCTTAGGAAAGGCATGAAGAATGGCGG
TGGCGTACAAGCGGTAGTTGCGATGATAAACAGATTTATAACAAAGCACCAAACAGATCAAACTCTGCCCCCAGAACCCCCCACCCAGCAAAGCACCACA
TGGACCTCCCACCTTACATGTCCTCCTCAGCCTCAGTGAACTCCATCTCGTCCATGCCTTCACCAGTGTACCAATGCAAGAAAGCCTTCCTCCTGAACAT
GGCAGTGAACTGCTCGCTCACCCTCCGGAACATCTCCTGGATGGAGGTCGAGTTGCCAACGAAGGTGGACGCCATGGAGAGCCCTGTCGGTGGGATGTCA
CAGACGCTGGACTTGACATTGTTGGGGATCCACTCCACAAAGTAGGATGAGTTCTTGTTCTGGACGTTGATCATCTGCTCGTCGACCTCCTTTGTGCTCA
TCTTTCCACGGAACATGGCAGAGGCGGTGAGGTAACGGCCATGGCGAGGATCGGCGGCGCACATCATGTTCTTGGCATCCCACATTTGCTGTGTGAGCTC
TGGGACAGTGAGGGCACGGTACTGCTGAGACCCACGGGATGTCAATGGAGCGAAGCCCACCATGAAGAAGTGGAGGCGGGGGAATGGGATAAGGTTCACT
GCCAGCTTCCGGAGGTCGGAATTCAGCTGACCAGGGAACCTTAGGCAGCATGTGACTCCACTCATGGTAGCAGAGATTAAATGGT