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Detailed information on CNT30681645


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 9e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672503Triticum urartuSetaria viridis24.6139.2681.94360forward
CNT30521106Triticum urartuSetaria italica24.6149.6681.94360forward
CNT30180865Triticum urartuSecale cereale33.4269.1795.91489forward
CNT30287807Triticum urartuTriticum aestivum53.1868.0799.74778forward
CNT30221752Triticum urartuHordeum vulgare31.0367.8696.48454forward
CNT30386026Triticum urartuTriticum turgidum56.665.1599.15828forward
CNT30555612Triticum urartuOryza glaberrima25.5635.7987.17374forward
CNT30436767Triticum urartuAegilops tauschii36.1670.9196.6529forward
CNT30248284Triticum urartuAvena sativa26.185191.91383forward
CNT30658347Triticum urartuTriticum dicoccoides30.7683.3396.67450forward
CNT30136970Triticum urartuLolium perenne26.3860.4188.34386forward
CNT30720492Triticum urartuTriticum spelta21.3362.0397.12312forward
CNT30597241Triticum urartuOryza meridionalis20.9235.1384.97306forward
CNT30150944Triticum urartuBrachypodium distachyon25.1555.0989.4368forward
CNT30104669Triticum urartuOryza rufipogon25.6345.2486.4375forward
CNT30578612Triticum urartuOryza barthii20.9227.0686.6306forward
CNT30118025Triticum urartuOryza nivara20.5125.9386300forward
CNT30556975Triticum urartuPanicum hallii24.5444.9383.57359forward
CNT30551876Triticum urartuOryza brachyantha24.1341.0586.4353forward

Expression of CNT30681645

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MHLILPPLLTLLRPALPERRLMGRPVVDLSPWKGATVVAEEAITAGAMVEYVNC*

>peptide 2 (34 aa)
MYAPVGKQSRATEVVDKSEVHKRSSYEIGHCFNS*

>peptide 3 (81 aa)
MMCLDHIILRKNNIQLSYLHASDPSAIADVAEAGAAGAAADGKASGRLKPLEGRDGGGGRSHHGWGHGGVRELLGGEAIAS*

Sequence

>CNT30681645
ATTAATAACAGCAAGAGAATGGTCCGCGTGTTGTATATAACAAATATTACACAGGTTTTGCATATGTATAGCCGGTGTATATAGACCTATGAGGAATTAT
GTATGCTCCAGTCGGAAAGCAGAGTCGTGCAACAGAGGTCGTGGACAAAAGTGAAGTTCACAAAAGATCTTCATATGAGATAGGCCATTGTTTCAACTCA
TAGTTTAAGCCTTGCCGGACTCCTCGCAACCCGGTGGCCTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGCCGATGACGCGGAC
ATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGTGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTAT
CGACCGTCGTAGTACCCGGGGGAGCTGTTGTGCTCACGGAAGACGAAGCCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAGGTAGT
CGACCTGCTTAAGGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATAGATGGAAT
TAACACAATTGATCAACACTTAGTGCTTAAAGAAAGACCTAGCCATAATAAGGCAAAAATTACTCCTTATGTCCATACATTTGTGGGGGGGTCTCCACAA
GCAAGAAAGCACAAGGGCACCTCTTTCTTATCGGTAGTGTATGGGCATTAAAATTAATATTATCTAGTACACATTGGAATAAAATCGATTTCAATTCACA
AAGTTTATGAGTTAAATATTCCTACACATGTGAACCTGCTTACGGACTACATTGTGATGCACAGTTTGGCCGGGCATGTGGGCGTCCTCCGGATAGCTTT
GCCTATGTGCAGTGGAAATACCCGATAAATTAATCAATTGTGGCAACAAAAACATTCATGCCAGCTTAGTGTCCGTCATCCTTCGCTAAAAAAAATCGAA
AAGGAGGATAACTCCAGCCTCTGCATCAAGTGATATGCACACTGTCATTTTTATTATATTATTCAAAAGAGTCTAACAAAACAAATACGATTTTAAACCA
AAGCCATCTTCGAGACGAACAAAATCGCTACACCTACAAGTACGATGATGTGCCTTGACCACATCATCCTTCGCAAAAATAATATTCAGCTTTCATACCT
GCATGCATCTGATCCTTCCGCCATTGCTGACGTTGCTGAGGCCGGCGCTGCCGGAGCGGCGGCTGATGGGAAGGCCAGTGGTCGACTTAAGCCCCTGGAA
GGGCGCGACGGTGGTGGCGGAAGAAGCCATCACGGCTGGGGCCATGGTGGAGTACGTGAATTGCTAGGTGGGGAGGCGATAGCTAGCTAGGCCACACTTG
ACTTGAGCCCTCCTCATGCCGCTCCAGTATATATCAGCGTATGCGCAGCGCCGCTCCTTTCAA