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Detailed information on CNT30681546


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 8e-47

BLAST vs NONCODE:
NONZMAT000139, E-value = 3e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672063Triticum urartuSetaria viridis93.6139.7392.2205forward
CNT30520246Triticum urartuSetaria italica94.5222.0294.2207forward
CNT30180108Triticum urartuSecale cereale93.1593.1593.63204forward
CNT30221546Triticum urartuHordeum vulgare94.5290.7997.1207forward
CNT30450022Triticum urartuSaccharum spontaneum93.6119.8393.66205forward
CNT30341737Triticum urartuEragrostis tef73.0633.5491.25160forward
CNT30361377Triticum urartuSorghum bicolor85.3916.6192.51187forward
CNT30596537Triticum urartuOryza meridionalis86.7634.2393.68190forward
CNT30106627Triticum urartuOryza longistaminata88.1395.0791.19193forward
CNT30148227Triticum urartuBrachypodium distachyon76.7166.6795.83168forward
CNT30496422Triticum urartuDigitaria exilis93.6133.2391.22205forward
CNT30117165Triticum urartuOryza nivara93.6145.7693.17205forward
CNT30604388Triticum urartuOryza punctata64.8442.7795.07142forward
CNT30556620Triticum urartuPanicum hallii94.5221.0493.72207forward
CNT30551356Triticum urartuOryza brachyantha66.2141.9193.79145forward

Expression of CNT30681546

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLFTMRTQRKPLPTSRLSVHSTDSSMYSGL

>peptide 2 (41 aa)
ASKLRIFQRWLSPSHHFQSTISVPSWTPPWALSPWKASKLR*

>peptide 3 (72 aa)
GVEVEDLPALVVALAPLPEHDLGAVVDAAVGLVAVEGVEVEVDVVHHAHAAEALAHVAALRPQHRLVHVLRVV

Sequence

>CNT30681546
GGCGTCGAAGTTGAGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGATCTCGGTGCCGTCGTGGACGCCGCCGTGGGCCTTGTCG
CCGTGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGCACGCAGCGGAAGCCCTTGCCCACGTCGCGGCTCTCCGTCCACAGCACCGACTCGT
CCATGTACTCCGGGTTGTA