Detailed information on CNT30681461


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XLR1|PIP26_ORYSJ, E-value = 2e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520589Triticum urartuSetaria italica32.866.0389.93139forward
CNT30386550Triticum urartuTriticum turgidum61.9462.53100262forward
CNT30586754Triticum urartuMusa acuminata23.1736.393.8898forward
CNT30553393Triticum urartuOryza glaberrima44.4437.7586.17188forward
CNT30436090Triticum urartuAegilops tauschii80.6132.7695.01341forward
CNT30657898Triticum urartuTriticum dicoccoides10057.8799.76423forward
CNT3013604Triticum urartuZea mays32.6210.0791.3138forward
CNT30227873Triticum urartuAnanas comosus27.919.1983.05118forward
CNT3039904Triticum urartuMarchantia polymorpha22.465.6485.2695forward

Expression of CNT30681461

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTAAPRLLAGLMPVPVMGMVASTGTWESRALRLGSVAEKTV*

>peptide 2 (64 aa)
MLAPPPLAWYASLMMPLTMPAPTMPPAHCATMYITARSSDTLRASSSPNVTAGLMWPPEMPAVQ*

>peptide 3 (67 aa)
CGLLVVDDGGAEAPGGVDAGAGDGDGGEHGDVGVAGAALGVGGGEDGVDEHEGADDLRPEGRAAGEP*

Sequence

>CNT30681461
TGCGGCCTTCTTGTTGTAGATGACGGCGGCGCCGAGGCTCCTGGCGGGGTTGATGCCGGTGCCGGTGATGGGGATGGTGGCGAGCACGGGGACGTGGGAG
TCGCGGGCGCTGCGCTTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGCACGAAGGTGCCGACGATCTCCGCCCCGAGGGCCGTGCCGCGGGAGAACC
CTGAGGCGACCATGTTGGCGCCGCCGCCGTTGGCCTGGTACGCGTCCCTCATGATGCCCTTGACGATGCCGGCGCCCACGATGCCGCCCGCGCACTGCGC
CACGATGTACATCACGGCGCGCAGCAGCGACACCTTGCGCGCCAGCAGCAGCCCGAACGTCACCGCGGGGTTGATGTGGCCCCCCGAGATGCCGGCGGTG
CAGTAGACGAGGACGAAGATCAT