Detailed information on CNT30681317


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3096327Triticum urartuSolanum tuberosum21.8413.4683.18107forward
CNT30585997Triticum urartuMusa acuminata18.1635.1889.8989forward
CNT30510798Triticum urartuSolanum lycopersicum18.7835.5282.6192forward
CNT30437294Triticum urartuAegilops tauschii24.4942.795120forward
CNT30659902Triticum urartuTriticum dicoccoides32.6551.9598.75160forward
CNT308389Triticum urartuZea mays11.0224.7790.7454forward
CNT30720770Triticum urartuTriticum spelta56.334694.57276forward
CNT30365764Triticum urartuSorghum bicolor25.3152.7791.13124forward
CNT30354795Triticum urartuLactuca sativa24.914.4981.97122forward
CNT30151326Triticum urartuBrachypodium distachyon24.6929.888.43121forward

Expression of CNT30681317

Peptides detected in this lncRNA

>peptide 1 (39 aa)
RIINKTRTNMSNSLRRISDMAEQTRQNCIWKSTPPHSNQ*

>peptide 2 (29 aa)
MPLFLGKSKRRLSQPSQGSKHNHNNKSSA*

>peptide 3 (63 aa)
MRPGISTSARSSSRRPKSAWERSLTLYSRPDEVFSTESAMEKVGGLDLAAEGGGRRGVMGGGGD

Sequence

>CNT30681317
CAGGATCATTAACAAAACACGCACAAATATGAGCAACAGCTTGCGAAGGATTTCAGACATGGCAGAACAAACGAGACAAAACTGTATCTGGAAAAGCACA
CCTCCTCACTCAAACCAATAATAATGCCATTATTTCTGGGCAAAAGCAAACGCCGCCTCTCCCAACCCTCACAAGGCTCAAAACATAACCATAATAACAA
ATCCTCCGCCTAAGAGACAGCATGTAAGATAATAGAAGGGAAACAGGATAGTTGATAGAGTTCCCGTTGGTGCCGCTGCTCCGACTCAGGCTCAGGCCAT
GAGGCCGGGCATCTCGACCTCGGCGAGGTCGAGCTCGAGGCGGCCGAAGTCGGCCTGGGAGAGGTCCTTGACCTTGTACTCCCGGCCCGACGAGGTCTTC
TCCACGGAGAGCGCCATGGAGAAGGTTGGTGGATTGGATCTGGCAGCGGAGGGAGGAGGAAGAAGAGGAGTGATGGGAGGAGGCGGCGAT