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Detailed information on CNT3068090


BLAST search results

BLAST vs Swiss-Prot:
sp|P27939|AMY3C_ORYSJ, E-value = 8e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554808Leersia perrieriOryza glaberrima29.8434.2394.76191forward
CNT30103497Leersia perrieriOryza rufipogon29.8431.7394.76191forward
CNT30604590Leersia perrieriOryza punctata22.528.1284.72144forward

Expression of CNT3068090

Peptides detected in this lncRNA

>peptide 1 (48 aa)
SGLTMWKTCGSGGIWAVGVSPSRRGKVWNLTSGVRSARGARAARPKVE*

>peptide 2 (37 aa)
MCPPSSLLCWIGVERRSIRLDSFDFCPNSPETKIHMA*

>peptide 3 (73 aa)
MTWLIQRQLAIITRLPLSLASETNLPFPSIRAAARRHTVDLHRRRRKHAAPNSYVSSLLSPLLDWRGAEIHPA*

Sequence

>CNT3068090
TTCAGGCTTAACTATGTGGAAAACGTGTGGTTCTGGAGGTATTTGGGCAGTGGGAGTGTCGCCGTCGAGGCGAGGTAAGGTGTGGAATCTGACTTCAGGA
GTGAGGTCAGCGAGAGGCGCCAGAGCAGCAAGGCCAAAGGTGGAATAGTCTCGCGGAAATGTCAAACCGGCCCAGGTAATTTGATGACGTGGCTTATCCA
ACGTCAACTCGCGATAATTACCAGATTGCCCCTCTCCTTGGCCTCAGAGACGAATCTCCCCTTCCCCTCGATCCGCGCCGCCGCCAGGCGCCATACCGTT
GATCTTCACCGGCGCCGCCGGAAGCACGCCGCGCCGAACTCCTATGTGTCCTCCCTCCTCTCTCCTCTGCTGGATTGGCGTGGAGCGGAGATCCATCCGG
CTTGATTCCTTCGATTTCTGCCCAAATAGCCCTGAAACAAAAATACATATGGCCTAGTGGTGACGCCCTGCTGGAACCCTGAGACCACTCTTTTCCCAGA
CGCAGTAATTGCTGCCGTGAGCAACGGCATGGAAGTCTGACGGGATCAAGTTGCCCACATCATACCGTGTCCCAATCTTTGTGATTACCTTGTCATCGAT
CATGGCAACATAGACATCTCCGTCAGCAGCAAGGATGTTC