Detailed information on CNT30680889


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET006154, E-value = 2e-117

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30291343Triticum urartuTriticum aestivum46.5922.2798.51335reverse complement
CNT30225628Triticum urartuHordeum vulgare20.1772.14100145reverse complement
CNT30553137Triticum urartuOryza glaberrima34.08102.0888.57245forward
CNT30250642Triticum urartuAvena sativa24.3413.1392.57175reverse complement
CNT30340274Triticum urartuEragrostis tef41.59101.786.62299forward
CNT30148014Triticum urartuBrachypodium distachyon17.5244.6894.44126reverse complement
CNT30575833Triticum urartuOryza barthii48.1251.6491.33346reverse complement
CNT30604314Triticum urartuOryza punctata15.1640.3799.08109reverse complement

Expression of CNT30680889

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSTLVSRIGIVEKAFSFESCKKVFFVFSLV*

>peptide 2 (30 aa)
AEAAIGLSILSSIHRNRKSTRINQSNLLNN*

Sequence

>CNT30680889
GCCGAAGCCGCTATTGGACTATCCATTCTTTCTTCCATCCATCGTAATAGGAAATCCACTCGTATCAATCAATCTAATTTATTGAATAATTAGACTTTTG
AATAATTAGACATAGAATCCTCTAAACAAAGGCGCACATATTAAAATAAATAGAAATCAATACTATTTTCTTAGTATTATTTGAGAATATCCATTTTTTT
AGTAGATTATTGCATAGTATTCTTTTTCACTTAAATGAATTTTTTTATTTGTAATTCATTGATATTGCAATTTGAATATTGCAATAATTTATATTGAAAA
GACGATAGCCAATTTATTGGCTAATTCGAAACATCTAAAAGATACTAAACCTCAATTCCAAGAAATTATATCTTCTAGCAAGACATTCACCGAGCAAGCG
GAAATCCTTTTGAAGGAAGCTATTCGGGAATAGCTGGAACGGTTTTCTCTTCAGTAACAAATAAATTTTGCATGTCTACTCTTGTTAGTAGAATAGGAAT
CGTTGAGAAAGCTTTTTCATTTGAATCATGCAAAAAAGTTTTCTTTGTTTTTAGTTTAGTATAGTTATTTAAAGAATAGATAGAAATAAGATTGCGTCCA
ATAGGATTTGAACCTATACCAAAGGTTTAGAAGACCTCTGTCCTATCCATTAGACAATGGACGCTTTTCTTTCATATTTTATTCTTTCTTTTATTTTTTT
GCTTCTTCCGAGAAAAAAC