Detailed information on CNT30680880


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 3e-42

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Triticum urartuOryza sativa45.6528.0691.1236forward
CNT30671877Triticum urartuSetaria viridis36.5694.594.18189forward
CNT30520655Triticum urartuSetaria italica41.5986.6992.09215forward
CNT30289434Triticum urartuTriticum aestivum50.6845.2593.89262forward
CNT30221016Triticum urartuHordeum vulgare76.7969.2885.89397forward
CNT30386449Triticum urartuTriticum turgidum66.1569.2399.71342forward
CNT30554471Triticum urartuOryza glaberrima45.6542.8391.1236forward
CNT30436341Triticum urartuAegilops tauschii47.280.2691.39244forward
CNT30251924Triticum urartuAvena sativa45.4543.293.19235forward
CNT30658643Triticum urartuTriticum dicoccoides85.6910099.77443forward
CNT30444735Triticum urartuSaccharum spontaneum41.7837.8392.59216forward
CNT30341886Triticum urartuEragrostis tef38.4973.4390.45199forward
CNT30596661Triticum urartuOryza meridionalis41.5960.0693.02215forward
CNT30370660Triticum urartuOryza glumipatula45.6541.1191.1236forward
CNT30104991Triticum urartuOryza longistaminata41.7891.1493.52216forward
CNT30102585Triticum urartuOryza rufipogon42.7562.7892.76221forward
CNT30577143Triticum urartuOryza barthii45.6546.5591.1236forward
CNT30593977Triticum urartuEragrostis curvula41.7897.391.67216forward

Expression of CNT30680880

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRMQRKPLPMSLLSVHSTDASSYAGLNGTSF

>peptide 2 (44 aa)
MLSIRDGPHDIVSSVDTYVRMCGYLDLPAYVHEPCMARAGWLAQ*

>peptide 3 (46 aa)
ISHELCMRIHCFYVFHMFNQLTKVLYCYVTCDYTHKHNSSVILRGR*

>peptide 4 (86 aa)
MHGARWLAGSVVRLELPALVVALAPLPEHDLGAVAHAAVVLVAVEGVEVEAGVVDHADAAEALAHVLALRPQHRRVLVRRVERHQLH

Sequence

>CNT30680880
ATTTCACATGAACTGTGCATGCGTATTCATTGCTTTTACGTATTTCACATGTTCAATCAGCTCACGAAGGTCCTTTATTGTTACGTAACTTGTGATTACA
CACACAAGCACAACAGCTCCGTTATTCTGCGGGGTAGGTAGCGAGAGACGCATGCATGTTGTCTATCCGGGACGGTCCACATGACATCGTTTCTTCAGTA
GATACGTACGTACGCATGTGTGGATATCTCGATCTCCCCGCGTACGTGCACGAGCCATGCATGGCGCGCGCTGGCTGGCTGGCTCAGTAGTACGGCTGGA
GCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCGCGCACGCCGCCGTGGTACTTGTCGCCGTTGAGGGCGTCGAA
GTTGAGGCGGGTGTTGTTGACCATGCGGATGCAGCGGAAGCCCTTGCCCATGTCCTTGCTCTCCGTCCACAGCACCGACGCGTCCTCGTACGCCGGGTTG
AACGGCACCAGCTTCAC