Detailed information on CNT30680825


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43210|PALY_WHEAT, E-value = 2e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691482Triticum urartuOryza sativa23.6249.7984.17120forward
CNT30244654Triticum urartuAvena sativa87.820.2587.22446forward
CNT30135452Triticum urartuLolium perenne64.1787.8785.58326forward
CNT30345244Triticum urartuEragrostis tef43.1187.9583.56219forward
CNT30364646Triticum urartuSorghum bicolor71.2632.9782.04362forward
CNT30592720Triticum urartuEragrostis curvula35.6363.0783.43181forward

Expression of CNT30680825

Peptides detected in this lncRNA

>peptide 1 (37 aa)
VVGELRLAVHDLTEDGRQDLSKEAKDVCLEKHHGGKA*

>peptide 2 (93 aa)
KWSVNSGLPFMTSQKTADKTSARRLRTFASKSTMEARPEPTAVPFTMARPSLGCSSKKPCWMPAILNASAALTFEPSGAVAMEFGRPVTRPAM*

>peptide 3 (38 aa)
MPEYPWSKVLTRTSIAALVAAAGRTWPSVPVPKAPALRN

Sequence

>CNT30680825
AAGTGGTCGGTGAACTCCGGCTTGCCGTTCATGACCTCACAGAAGACGGCCGACAAGACCTCAGCAAGGAGGCTAAGGACGTTTGCCTCGAAAAGCACCA
TGGAGGCAAGGCCTGAGCCCACTGCCGTGCCATTCACCATGGCAAGGCCTTCCTTGGGCTGTAGCTCGAAGAAGCCGTGCTGGATGCCGGCGATCTTAAA
TGCCTCCGCAGCATTAACCTTCGAACCATCCGGAGCCGTCGCCATGGAGTTTGGGCGGCCGGTGACCAGGCCGGCGATGTAGGAAAGCGGGACGAGGTCA
CCGGATGCGGTGATCGTGCCCCGGAGCGGCAGGCATGGTGTCACGTTGGCGTTGAGAAGTGTGGCGACCGTCTCCAGGATCTCGAAGCGGATGCCTGAAT
ATCCCTGGAGTAAGGTATTGACTCGGACGAGCATCGCCGCCCTCGTCGCCGCAGCAGGCAGGACGTGGCCGTCGGTGCCGGTGCCGAAGGCTCCCGCGTT
AAGGAATC