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Detailed information on CNT30680645


BLAST search results

BLAST vs Swiss-Prot:
sp|P27665|PSBO_WHEAT, E-value = 6e-131

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690150Triticum urartuOryza sativa17.0357.3985.89163forward
CNT30675069Triticum urartuSetaria viridis22.3672.0591.59214forward
CNT30547255Triticum urartuIpomoea triloba29.1553.6584.23279forward
CNT30266710Triticum urartuChenopodium quinoa26.8530.0680.93257forward
CNT30181115Triticum urartuSecale cereale96.8769.9196.44927forward
CNT30542247Triticum urartuBrassica napus13.6921.9883.97131forward
CNT30244470Triticum urartuAvena sativa43.5775.5493.29417forward
CNT309111Triticum urartuZea mays29.1538.0191.04279forward
CNT30356640Triticum urartuLactuca sativa19.4427.9381.72186forward
CNT30704492Triticum urartuPrunus avium26.5427.0579.53254forward
CNT30574985Triticum urartuOryza barthii17.0357.1985.89163forward
CNT30724288Triticum urartuLupinus angustifolius30.6225.5779.18293forward

Expression of CNT30680645

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MSLVFWKAGGSFFWMPSALTVKEVGSRQNFFISYLPALKGKESTPPSMVSLLGAPSALAPCTHACHSS*

>peptide 2 (64 aa)
MSDCREQVILAPASTPNARATCDDGRAEEARPPILAGISVAAAWRDAAMLVGGLVRGRIDPTGG*

>peptide 3 (45 aa)
SPVSGLLLVTLSVMLPVDEDAFFTFSLANSSSSPLPPAGSATALS*

>peptide 4 (38 aa)
AGLRLALGHAERDVARGRGRVLHVLLSQLLLVSSASGG*

Sequence

>CNT30680645
TCGCCGGTCTCCGGCTTGCTCTTGGTCACGCTGAGCGTGATGTTGCCCGTGGACGAGGACGCGTTCTTCACGTTCTCCTTAGCCAACTCCTCCTCGTCTC
CTCTGCCTCCGGCGGGTAGCGCCACGGCGTTGTCGTAGCCAGTAGAGCCACCACGGCCCTTTGGGTCGAGGAAAGACGAACCCCTGTAGCTGGGCACGAG
GAAGGGCCCGCTGAAGCTCTCGGGCTTGCCGGTAGCGACGAGCTGCTTGACGGTGAAGAGGAAGGGCACTCGCTCGCCTCCGGGGAGCTGCACGGTGACG
GCCGCGTAGTCGATGCCGTCCTTCTCCTCGAACTTGAGGGTGCCGTCGGCGCCAACCTCGAGCGGGCCTTCCATCTCGTCAAGGGTGTAGGTGAGACGGG
TCATGAGCTTGGTTTTCTGGAAGGCCGGCGGCTCGTTCTTCTGGATGCCCTCGGCCTTGACGGTGAAGGAGGTGGGCTCCAGGCAGAACTTCTTCATCTC
GTACTTGCCGGCCTTGAAGGGGAAGGAGTCGACGCCGCCGTCGATGGTCAGCCTCTTGGGCGCCCCCTCCGCGCTCGCGCCCTGCACCCACGCCTGTCAC
TCTAGCTAGCTGGACTGGAGTGGAGTAAACGGCCATGGACGGCAATAGAATGGATTAGTCAGCTTACGGAGACGAGGAGGGCAGAGGTGGCGAGGGCGAA
GCCGGCCATCTTGGCGGCGTCGGCGCACTTGCTTGCGACCTCCCTGATGTCGGACTGCAGGGAGCAGGTGATCCTGGCGCCAGCGTCAACGCCGAACGCC
CGGGCGACGTGCGACGACGGCCGCGCGGAGGAGGCCCGGCCGCCGATCTTGGCCGGCATCAGCGTGGCCGCGGCTTGGAGAGACGCTGCCATGTTGGTCG
GTGGCTTGGTACGCGGGAGGATCGATCCCACTGGTGGTTGAGAGGCGTGTTGTCAGG