Detailed information on CNT30680542


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 7e-23

BLAST vs NONCODE:
NONZMAT000139, E-value = 1e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30288744Triticum urartuTriticum aestivum50.8132.4198.4188forward
CNT30340854Triticum urartuEragrostis tef38.1161.8495.04141forward
CNT30117229Triticum urartuOryza nivara51.0832.2592.59189forward

Expression of CNT30680542

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MHGARWLAGSVVRLELPALVVALAPLPEHDLGAVAHAAVVLVAVEGVEVEVDVVHHAHAPEPGRIFQRWLS

>peptide 2 (44 aa)
MLSIRDGPHDIVSSVDTYVRMCGYLDLPAYVHEPCMARAGWLAQ*

Sequence

>CNT30680542
CACACAAGCACAACAGCTCCGTTATTCTGCGGGGTAGGTAGCGAGAGACGCATGCATGTTGTCTATCCGGGACGGTCCACATGACATCGTTTCTTCAGTA
GATACGTACGTACGCATGTGTGGATATCTCGATCTCCCCGCGTACGTGCACGAGCCATGCATGGCGCGCGCTGGCTGGCTGGCTCAGTAGTACGGCTGGA
GCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCGCGCACGCCGCCGTGGTACTTGTCGCCGTTGAGGGCGTCGAA
GTTGAGGTAGATGTTGTTCACCATGCGCACGCACCTGAACCCGGGAGGATCTTCCAGCGCTGGTTGTCGC