Detailed information on CNT30680368


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697529Triticum urartuOryza sativa22.8114.5693.3360forward
CNT30180208Triticum urartuSecale cereale39.1624.4798.06103forward
CNT30221417Triticum urartuHordeum vulgare84.7936.9295.07223forward
CNT30436158Triticum urartuAegilops tauschii89.7379.1999.15236forward
CNT30252158Triticum urartuAvena sativa62.3642.9392.07164forward
CNT30658022Triticum urartuTriticum dicoccoides92.490100243forward
CNT30137831Triticum urartuLolium perenne79.0948.2688.94208forward
CNT30349480Triticum urartuEragrostis tef24.3326.1293.7564forward
CNT30367109Triticum urartuSorghum bicolor25.4817.2789.5567forward
CNT30104555Triticum urartuOryza rufipogon22.818.2393.3360forward
CNT30551854Triticum urartuOryza brachyantha22.058.2389.6658forward

Expression of CNT30680368

Peptides detected in this lncRNA

>peptide 1 (86 aa)
LLLGEVLVEDACPGRPGGGGRDGEDGRQAEKRRPPVLGRGDLHALCRRRRGGLRHRRGGLEADHTGVHAGHDPLEVFLMNLVCVRVC

>peptide 2 (77 aa)
FCLARYSSKTLALADPAEAAVTAKTAARPRSADRRSLAGATCTRFAAAGEADCGTAAAGLRPTTLVFTPAMILSRFS*

Sequence

>CNT30680368
CTTCTGCTTGGCGAGGTACTCGTCGAAGACGCTTGCCCTGGCCGACCCGGCGGAGGCGGCCGTGACGGCGAAGACGGCCGCCAGGCCGAGAAGCGCCGAC
CGCCGGTCCTTGGCCGGGGCGACCTGCACGCGCTTTGCCGCCGCCGGCGAGGCGGACTGCGGCACCGCCGCGGCGGGCTTGAGGCCGACCACACTGGTGT
TCACGCCGGCCATGATCCTCTCGAGGTTTTCTTGATGAATCTGGTGTGTGTGCGTGTGTGTGG