Detailed information on CNT30680357


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XLR1|PIP26_ORYSJ, E-value = 5e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Triticum urartuOryza sativa53.5223.8687.5152forward
CNT30289517Triticum urartuTriticum aestivum63.3832.5597.78180forward
CNT30221631Triticum urartuHordeum vulgare48.599.986.96138forward
CNT30387764Triticum urartuTriticum turgidum63.3820.2997.78180forward
CNT30553402Triticum urartuOryza glaberrima53.5229.0687.5152forward
CNT30436608Triticum urartuAegilops tauschii57.3922.6798.77163forward
CNT30653715Triticum urartuRosa chinensis40.1419.5585.96114forward
CNT30596194Triticum urartuOryza meridionalis53.5234.9486.84152forward
CNT30370019Triticum urartuOryza glumipatula53.5229.9287.5152forward
CNT30109688Triticum urartuOryza longistaminata53.5228.6887.5152forward
CNT30101372Triticum urartuOryza rufipogon53.5220.1687.5152forward
CNT30576241Triticum urartuOryza barthii53.5222.9387.5152forward
CNT30116534Triticum urartuOryza nivara53.5235.1987.5152forward

Expression of CNT30680357

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAAAECGRSPLSLSLSSLMDGWMGVVECDE*

>peptide 2 (90 aa)
GAEAPGGVDAEEEQRGDELGDERPVEGPHPELPHVEERRRRRVGVVLVRRRGVLRLLAHLLGHGCCGVRTLSSLSLSLFSDGWMDGGGGV*

Sequence

>CNT30680357
GGCGCCGAGGCTCCTGGCGGGGTTGATGCCGAGGAAGAGCAGCGTGGCGACGAACTCGGCGATGAGCGCCCGGTAGAAGGACCACATCCGGAGCTCCCCC
ATGTCGAAGAGCGGCGCCGGCGGCGGGTCGGAGTAGTCCTTGTGCGCCGGCGCGGCGTGCTCCGGCTCCTCGCTCACCTCCTTGGCCATGGCTGCTGCGG
AGTGCGGACGCTCTCCTCTCTCTCTCTCTCTCTCTTCTCTGATGGATGGATGGATGGGGGTGGTGGAGTGTGATGAGTGAGTGT