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Detailed information on CNT30680228


BLAST search results

BLAST vs Swiss-Prot:
sp|P53415|CHS2_SECCE, E-value = 2e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628476Triticum urartuVigna unguiculata22.8814.381.48108forward
CNT3045136Triticum urartuPrunus dulcis32.224.4480.92152forward
CNT30156270Triticum urartuPistacia vera15.4727.1486.373forward
CNT30192407Triticum urartuSecale cereale93.6466.1792.08442forward
CNT30564019Triticum urartuActinidia chinensis28.3918.0884.33134forward
CNT3088050Triticum urartuVigna radiata28.3926.6984.33134forward
CNT30252036Triticum urartuAvena sativa25.427.584.17120forward
CNT30466546Triticum urartuSaccharum spontaneum25.4245.1190120forward
CNT30610101Triticum urartuGossypium raimondii20.973.882.8399forward
CNT30365238Triticum urartuSorghum bicolor33.2628.4985.99157forward
CNT30355776Triticum urartuLactuca sativa37.7130.6979.78178forward
CNT30155426Triticum urartuPrunus persica28.3945.4281.34134forward
CNT30705527Triticum urartuPrunus avium28.3928.9480.6134forward
CNT30103826Triticum urartuOryza rufipogon41.128.0883.51194forward
CNT30114121Triticum urartuFicus carica28.398.2984.33134forward

Expression of CNT30680228

Peptides detected in this lncRNA

>peptide 1 (87 aa)
KTEFQLSMPNGLNVSSRARSMFLEMSPGTSLRRWKVRPTSRRWPSMAPSESGRIVWLADTSWNRDLSMDSSGSAPMITAAAPSPKSA*

Sequence

>CNT30680228
AAGACGGAGTTCCAGTTATCGATGCCCAATGGCTTGAATGTGTCCTCTAGGGCGCGCTCGATGTTCTTGGAGATGAGCCCAGGCACATCCTTGAGGAGGT
GGAAGGTGAGGCCAACCTCTCGGAGGTGGCCGTCGATGGCACCCTCTGAGTCCGGTAGAATCGTCTGGCTTGCAGACACTAGCTGGAATAGGGACCTCTC
GATGGACTCATCGGGGTCTGCACCGATGATCACCGCGGCTGCACCATCGCCGAAGAGTGCCTGACCTACCAGTGAGTCGAGGTGGGACTCGTGCGGGCCG
CGGAAGGTCACCGCAGTGATCTCCGAGCAGACCACCAACACGCGCGCACCGCGGTTGTTCTCAGCGAGGTCTTTGGCCAGGCGAAGCACCGTGCCACCGG
CGAAGCAGCCCTGCTGATACATCATGAGGCGCTTCACAGACGGGCGCAGGCCGAGCATCTTGGTCAGCTGGT