Detailed information on CNT30680154


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000338, E-value = 1e-147

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30228621Triticum urartuAnanas comosus96.2880.7797.02336reverse complement
CNT30574571Triticum urartuVitis vinifera91.125.1792.45318forward
CNT3052251Triticum urartuAmborella trichopoda43.272.5794.04151forward
CNT3099667Triticum urartuOryza rufipogon10015.2298.85349forward

Expression of CNT30680154

Peptides detected in this lncRNA

>peptide 1 (40 aa)
RVGLGEDPSDCLRGSKCAHKAHNKNKTNRDFIRDHLSCRS*

>peptide 2 (50 aa)
MNRTSTSSVTPTALTALYPNPTSSGPGSSRISSSVSGPWKLGSIRLGLIEN

Sequence

>CNT30680154
CCCGGGTTGGGTTAGGGGAAGATCCGAGCGATTGCCTTCGCGGATCCAAATGTGCTCACAAGGCGCACAATAAGAATAAGACCAATAGAGACTTCATAAG
GGACCATTTGAGCTGCAGATCGTAATGCTCCTAGAAAGGCATATTTCGAATATAGAGGACGTTCCCAACAATCCACGAGAATATCATACCCAACTATGAA
CCGTACGAGCACATCCTCTGTCACCCCCACCGCGCTTACGGCTCTATACCCCAACCCAACTTCCTCTGGCCCTGGGTCCTCCCGCATCTCTTCCTCGGTA
AGCGGACCGTGGAAGCTGGGGAGTATCCGCTTGGGACTGATAGAAAACA