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Detailed information on CNT30680065


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LK36|SAHH2_ARATH, E-value = 2e-37

BLAST vs NONCODE:
NONBNAT006042, E-value = 5e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675951Triticum urartuSetaria viridis50.9280.4284.97193forward
CNT30639580Triticum urartuNymphaea colorata34.328.6382.31130forward
CNT30529934Triticum urartuEucalyptus grandis32.1929.2683.61122forward
CNT30376211Triticum urartuArabidopsis thaliana36.9419.3682.86140forward
CNT30619260Triticum urartuSesamum indicum40.1114.2784.21152forward
CNT3020599Triticum urartuCitrullus lanatus20.056.686.8476forward
CNT3072357Triticum urartuQuercus suber51.1918.8980.93194forward
CNT30628366Triticum urartuVigna unguiculata26.39785100forward
CNT30543653Triticum urartuBrassica napus25.0713.7789.4795forward
CNT3076639Triticum urartuBrassica juncea31.418.6284.87119forward
CNT30261371Triticum urartuBrassica rapa23.7521.5387.7890forward
CNT30612366Triticum urartuArabis alpina44.8562.7380.59170forward
CNT30601056Triticum urartuFraxinus excelsior27.4419.2281.73104forward
CNT30651401Triticum urartuRosa chinensis25.0735.4585.2695forward
CNT30573685Triticum urartuVitis vinifera25.0724.3687.3795forward
CNT3026673Triticum urartuPopulus trichocarpa51.1920.5383.51194forward
CNT30103811Triticum urartuOryza rufipogon36.1526.7690.51137forward
CNT30578287Triticum urartuOryza barthii38.5227.791.1146forward
CNT30723196Triticum urartuLupinus angustifolius36.9417.5783.57140forward

Expression of CNT30680065

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MLMYSDWALVSLVSLAPSLPRWRAATFSSRCLGSTYTFFSYLPVAFSFHNSS*

Sequence

>CNT30680065
TTTAAACCAAAATAATAACACTATTATTTCTGGGCAATAGCAATCCACCACACCCTCAGCGGTCTCAAACCATGACAAATCCTCCACCTAATAGACAACA
TGCCTAAATCTAGATAGATAATGCAAAGGAAAACAGGATAGTTCATAGTCGTGCTGGACAGACACACTAGTACCGGTATGCCGCCGGCTTGTAGGGACCA
TCGACTGGGATGCTAATGTACTCAGACTGGGCCTTGGTGAGCTTGGTAAGCCTGGCACCCAGCTTGCCCAGGTGGAGGGCGGCGACCTTCTCGTCCAGGT
GCTTGGGGAGCACGTACACCTTCTTCTCGTACTTGCCGGTGGCCTTCTCGTTCCACAACTCAAGCTGAGCAATGACCTG