Detailed information on CNT3068006


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179293Leersia perrieriSecale cereale34.8342.9687.07116forward
CNT30288028Leersia perrieriTriticum aestivum35.4417.5685.59118forward
CNT3084275Leersia perrieriVigna radiata34.5313.0286.96115forward
CNT30469053Leersia perrieriSaccharum spontaneum47.457.6393.67158forward
CNT30686449Leersia perrieriTriticum urartu39.0421.3885.38130forward
CNT30102816Leersia perrieriOryza rufipogon29.1313.5393.8197forward
CNT30117381Leersia perrieriOryza nivara23.4210.1793.5978forward

Expression of CNT3068006

Peptides detected in this lncRNA

>peptide 1 (41 aa)
ARRVRRRRRCRQRLLLRWFFRCVDGVTGGVGGGWGGDGGGG*

>peptide 2 (48 aa)
MRRKRTTRRRTASSACRRRRGRCGACRPWSSNGGSPCRSAAAGRCCSC*

>peptide 3 (71 aa)
LAVSGAGGGVVNVFFSVGSFVALMESPAASAAVGVGTEAADEEEEDDEEEDGFFRVPPPTGTLRSVPPLVQ*

Sequence

>CNT3068006
CGCTCGCCGTGTCAGGCGCCGGCGGCGGTGTCGTCAACGTCTTCTTCTCCGTTGGTTCTTTCGTTGCGTTGATGGAGTCACCGGCGGCGTCGGCGGCGGT
TGGGGTGGGGACGGAGGCGGCGGATGAGGAGGAAGAGGACGACGAGGAGGAGGACGGCTTCTTCCGCGTGCCGCCGCCGACGGGGACGTTGCGGAGCGTG
CCGCCCTTGGTCCAGTAACGGCGGCAGCCCTTGCAGAAGTGCCGCGGCTGGGAGGTGTTGTAGTTGTTGAAGTAGCAGAACTTGGTGTCCCGCGACTCGC
ACCGCGGACACGGGTCACCCTCCGCCGCCGCCG