Detailed information on CNT30680054


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003894, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673952Triticum urartuSetaria viridis24.0166.6797.49438reverse complement
CNT30555411Triticum urartuOryza glaberrima14.3164.7699.23261forward
CNT3017561Triticum urartuZea mays48.1973.7496.93879reverse complement
CNT3067405Triticum urartuLeersia perrieri22.710094.93414reverse complement
CNT30203328Triticum urartuHelianthus annuus28.7363.6796.37524reverse complement
CNT30371139Triticum urartuOryza glumipatula16.9462.4298.06309forward

Expression of CNT30680054

Peptides detected in this lncRNA

>peptide 1 (80 aa)
VGFGYRYPFVEGRSSFSWEYGISYILQRRSAWYEPRGEAIASPRLILQRCQRLVLGTRLEAFSLPLLTLKKQGHLVSLNL*

>peptide 2 (68 aa)
SVSGTGTLLLKVVRAFPGSMASVTYFSAVAPGMSLVEKQSLVHGSYFSAASAWYSELGSRHFLYPFLP*

>peptide 3 (57 aa)
MLIPQIPSLFLLREKKLTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQCG*

>peptide 4 (47 aa)
MTSNMASSYSVTGGVYKARERIHRRMADRRLLAIPASCRRVAACNPN*

>peptide 5 (34 aa)
MFSLLKPTFSLPLRRPPLSRLLPSKAERSPTDAF*

>peptide 6 (29 aa)
MLIFNSPKHFVACYALPRLWVPRHPPPYG*

Sequence

>CNT30680054
GTCGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCATCAGTTACATACTTCAGCGCCGTAGCGCCTGGTATG
AGCCTCGTGGAGAAGCAATCGCTAGTCCACGGCTCATACTTCAGCGCTGCCAGCGCTTGGTACTCGGAACTCGGCTCGAGGCATTTTCTCTACCCCTTCT
TACCCTGAAAAAGCAGGGTCACCTTGTGTCCTTAAACCTATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCCGTACCAACAAGGGGTAGTACA
GGAATATTGACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAAACCTTGGGTTTT
CGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCGACCCCCGCTTTCGCGGTTGCTTCCCTCTAAGGCGG
AACGCTCCCCTACCGATGCATTTTGACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTAC
GCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGT
GGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGCGTAAGCTAGTGATGCTTTCGGCTACTGGACTTTAGCCATCTAGGG
TGCGGCACTCAACCGCTTCGCCTAGCAGCACAACGCTTGTATTGCTCTCCCACAACCCCGTTTTCACGGTTTAGGCAGTTTAAAAGGTTGACCTATTTGG
GAATCTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCTCGTCTCTGGGTGCCTAGGCATCCCCCTCCTTACGG
TTAAGGGTAATGACTTCAAACATGGCCAGCTCCTATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGGATTCACCGCCGTATGGCTGACCGGCGAT
TACTAGCGATTCCTGCTTCATGCAGGCGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGAGATCGCGACCCTTT
GTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTTAACACCGGCGGTCTGTTCA
GGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTC
AGATACCGTCATTGTTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGGCCTTCCACCTCCACGCGCCATTGCTCCGTCAGGCTTTCGCCCATTGCGGA
AAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAA
GCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGGGCGGATTTCTCCTTTTGCTCCTCAGCCTACGGGGTATTAGCAACCGTTCCAGTT
GTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTTCGCCACTGGAAACACCACTTCCCGTTCGACTTGCATGTGTTAAGCATGCCGCCA
GCGTTCATCCTGAGCCAGGATCGA