Detailed information on CNT30680034


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378675Triticum urartuArabidopsis thaliana44.3262.2690.91495reverse complement
CNT3092581Triticum urartuSolanum tuberosum36.2682.9990.12405forward
CNT30223244Triticum urartuHordeum vulgare62.9464.7997.01703reverse complement
CNT30655404Triticum urartuRosa chinensis52.3768.4291.62585forward

Expression of CNT30680034

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MWSNFWPCTDHPTDHGLNGHCLKGLCYVQGTAALHKVHLAPMGRYNYPRRHSKKEG*

>peptide 2 (71 aa)
MSRGPPPSTRYILRLWAAITIQEDTRKRKDKQTYPVDCRATSPTTQERDSLKSQGLRWPRGPTWRLGMQEM*

>peptide 3 (44 aa)
MKERKSSSTSHPEEERPTANDLEFPGGLGLKDKCVWISTSLSLL*

>peptide 4 (52 aa)
MFVAKDKWFCQNQESFYELATHDKCRLIRVNVNKWMSVVKDNVCSSSLKRFS*

>peptide 5 (34 aa)
MNLEMILIGLKSSTVLASFFFGRRVMDAWVSLQT*

>peptide 6 (30 aa)
RLPSPLWGSGPLQVSRKGRRKEALVNRHNK*

Sequence

>CNT30680034
GTCGACTCCCTTCCCCTTTGTGGGGGTCTGGACCCCTACAAGTGAGCAGAAAAGGGAGGAGGAAAGAGGCCCTGGTGAACCGTCATAATAAGTGAACAAG
TGTAAGCTTTGCTGCCCGACAGTATGGAGTACTGACCACACCGAGGGACAGGCCCTGAAGCGAAGGCCAGGAACGAGCGGAATCAATGTGGTCCAATTTC
TGGCCTTGCACCGACCATCCAACGGACCATGGACTAAACGGCCACTGCCTGAAAGGACTATGCTATGTCCAGGGGACCGCCGCCCTCCACAAGGTACATC
TTGCGCCTATGGGCCGCTATAACTATCCAAGAAGACACTCGAAAAAGGAAGGATAAACAAACCTACCCGGTGGACTGCCGAGCTACAAGTCCTACGACAC
AGGAGCGGGATTCTCTAAAAAGCCAAGGTCTTAGGTGGCCAAGAGGGCCCACTTGGAGACTTGGGATGCAGGAAATGTGAAGGTTGTTCAAAGCTGGCCG
ATAGGCGAAAGAGAATCCAAAAGTTTTGTTCTGATCTGAGTAGACTCAACATAGGGAATACCCTAACCCTGGGATCCAGGGCATATAAATCCGCTTATGG
CATTCACCCAAGCATACAGAGATAGATGGAATGAAAGAAAGAAAAAGTAGCTCCACATCTCACCCAGAAGAAGAAAGACCCACCGCTAACGATTTGGAAT
TCCCTGGTGGGCTGGGCCTGAAAGACAAGTGTGTGTGGATTTCCACATCCTTGTCCTTACTTTAAGACACAACTCTTCTCTTTCTCGGTCAAATGACTTG
CGATAGTCTACCTTGAGTAGGACCATAGGGATCTTATGTTTGTGGCGAAAGATAAGTGGTTCTGTCAGAACCAAGAAAGTTTCTATGAGTTAGCGACCCA
TGATAAATGCCGATTGATACGTGTCAATGTCAATAAGTGGATGAGTGTTGTTAAAGACAATGTTTGTTCCTCTTCTTTGAAACGATTTTCATGAATCTCG
AGATGATACTGATTGGCCTGAAATCCTCGACGGTGTTGGCATCTTTTTTCTTTGGGAGGAGAGTGATGGATGCCTGGGTTAGCCTCCAAACATAAAGGCC
ATTGCTATGAAAGAGCT