« Back to Leersia perrieri search


Detailed information on CNT3067980


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672008Leersia perrieriSetaria viridis53.4919.8898.14161reverse complement
CNT30702366Leersia perrieriQuercus lobata53.4916.1696.89161forward
CNT30378673Leersia perrieriArabidopsis thaliana53.4912.9196.89161forward
CNT3020470Leersia perrieriCitrullus lanatus53.4929.8796.27161forward
CNT3094274Leersia perrieriSolanum tuberosum44.8545.7694.81135forward
CNT30289016Leersia perrieriTriticum aestivum53.4950.9597.52161forward
CNT30554477Leersia perrieriOryza glaberrima53.4922.2796.27161forward
CNT30245388Leersia perrieriAvena sativa53.4946.5397.52161forward
CNT30605073Leersia perrieriGossypium raimondii53.4910.5996.89161forward
CNT30715685Leersia perrieriMalus domestica golden21.265.2698.4464forward
CNT30720411Leersia perrieriTriticum spelta53.4944.8597.52161forward
CNT30346087Leersia perrieriEragrostis tef53.4915.5797.52161reverse complement
CNT30484250Leersia perrieriChara braunii53.1622.0491.88160forward
CNT30434609Leersia perrieriPapaver somniferum53.4929.1796.89161reverse complement
CNT30571801Leersia perrieriVitis vinifera53.4912.3496.89161forward
CNT30707286Leersia perrieriPrunus avium22.2610.692.5467reverse complement
CNT3057237Leersia perrieriAmborella trichopoda53.4911.6795.03161reverse complement
CNT3038324Leersia perrieriCucumis melo53.498.5496.27161forward
CNT3099471Leersia perrieriOryza rufipogon44.8553.5796.3135forward
CNT30557400Leersia perrieriPanicum hallii53.4911.7395.03161reverse complement

Expression of CNT3067980

Peptides detected in this lncRNA

>peptide 1 (99 aa)
QAGRHIPLCSQAESMLEPTFAHLRYSLGGILRRKSGLSGLVVVCHHRQGCHYEAIVKVHVVLPSSYWYSASSRRIQFHRVHVGDSGAVVTPFVQVATYAT

Sequence

>CNT3067980
CAGGCAGGCAGGCATATACCATTATGCTCACAAGCGGAATCAATGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCATCCTTAGACGAA
AGAGTGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCGTCAAGGTTGTCACTACGAAGCTATAGTCAAGGTGCACGTGGTCTTACCGTCTAGCTATTG
GTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACA
A