Detailed information on CNT30679781


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 4e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672419Triticum urartuSetaria viridis25.9344.7382.18174forward
CNT30178523Triticum urartuSecale cereale45.654.5589.22306forward
CNT30242017Triticum urartuAvena sativa24.4433.9592.68164forward
CNT30338869Triticum urartuEragrostis tef11.9220.2587.580forward
CNT30101676Triticum urartuOryza rufipogon22.9536.3284.42154forward

Expression of CNT30679781

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MVCVLSNSCWVVPAGGAGDGGGGGPDGELAAGDGAAGQAPHGDRLDGDERRHCDRAVRAYTVGVSWFWSCGVR

>peptide 2 (32 aa)
NDLLVVIACIMQAASSQLLIRSSTKIKYQQRT*

>peptide 3 (85 aa)
MPCQLSHAVLLSIDGVRAVELVLGGTCGWSGRRRRRRAGRRACGRRWSCRPGPARRPAGRRRATPLRSSCTCVYRGRVLVLELRGT

>peptide 4 (83 aa)
MSVEPRGVALDRWCACCRTRVGWYLRVERETAAEAGRTASLRPEMELPARPRTATGWTATSDAIAIELYVRIPWACPGSGAAGY

Sequence

>CNT30679781
AATGATCTACTAGTAGTAATTGCATGCATCATGCAAGCAGCATCTTCCCAATTACTGATACGAAGTAGTACAAAGATCAAGTATCAACAGAGGACATAGA
TAGGGCCATAGGGGGGAATCCATCAGATCCATGGTACACAAGCACGAGGCGAGAGGAGGAAGAAGGCCTTGATTGCAGATCTACTTAGATCTTGCCACGT
GGCCCCGGGGTGGGGGGCAGCTGGGGCCCCTTCTTGATGGGGAGCAGGTCGGGGGAGGCGGTGGCGCTGACGTAGGCGAGCAGGGAGCCGCCGCCGAGCA
GCAGGACCTTGAGCAGCAGCCCTCGCTTGGTGAAGGGCGCGGCGAAGGTGTCGAAGTAGACGCTCTTCTCCCCGTACTTGGCCACCACCGCCGCCCCGCG
AGCCCTGCGTTCATGCCATGTCAGTTGAGCCACGCGGTGTTGCTCTCGATCGATGGTGTGCGTGCTGTCGAACTCGTGTTGGGTGGTACCTGCGGGTGGA
GCGGGAGACGGCGGCGGAGGCGGGCCGGACGGCGAGCTTGCGGCCGGAGATGGAGCTGCCGGCCAGGCCCCGCACGGCGACCGGCTGGACGGCGACGAGC
GACGCCATTGCGATCGAGCTGTACGTGCGTATACCGTGGGCGTGTCCTGGTTCTGGAGCTGCGGGGTACGT