Detailed information on CNT30679535


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677561Triticum urartuSetaria viridis77.2290.9181.5200forward
CNT3019911Triticum urartuCitrullus lanatus31.6612.7386.5982forward
CNT30250827Triticum urartuAvena sativa40.1529.9790.38104forward
CNT3061548Triticum urartuArabidopsis lyrata25.878.1889.5567forward
CNT30141453Triticum urartuLolium perenne25.8721.1491.0467forward
CNT3016329Triticum urartuZea mays27.4114.1788.7371forward
CNT30713351Triticum urartuMalus domestica golden25.8715.1688.0667forward
CNT30361762Triticum urartuSorghum bicolor28.5722.5690.5474forward
CNT30116122Triticum urartuOryza nivara44.442.9182.61115forward

Expression of CNT30679535

Peptides detected in this lncRNA

>peptide 1 (85 aa)
HKCSLGVTDVAVQLTIANTVHLSRDPTDMALQLELLNFRVEVDSHVCSRRDDVELRIKHVNPMDNPVQIREGESNVRLVLAHAIFA

>peptide 2 (33 aa)
AQMLPWCHRCSGTAHHCEHGSSEQRSNGYGPSA*

>peptide 3 (31 aa)
MSAPGETMLNLGSNTSIPWTTRYRSGRVKAM*

Sequence

>CNT30679535
GCACAAATGCTCCCTTGGTGTCACAGATGTAGCGGTACAGCTCACCATTGCGAACACGGTTCATCTGAGCAGAGATCCAACGGATATGGCCCTTCAGCTT
GAGCTCCTCAATTTCAGAGTGGAAGTAGACAGTCATGTCTGCTCCAGGAGAGACGATGTTGAACTTAGGATCAAACACGTCAATCCCATGGACAACCCGG
TACAGATCAGGGAGGGTGAAAGCAATGTGAGACTCGTATTGGCCCACGCTATCTTTGCT