Detailed information on CNT30679489


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 3e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693915Triticum urartuOryza sativa74.1181.3796.39166forward
CNT30553804Triticum urartuOryza glaberrima41.9615.5996.8194forward

Expression of CNT30679489

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRRCWSGGIPSLSWILALTLSMVSEDSTSSVMV

>peptide 2 (37 aa)
LCLCFCFLGLVYVFFLRFLAPPRRRSTRWRVDSFWML*

>peptide 3 (73 aa)
LVLVLLLLGLGVRLLLALLGATAEAEHQVEGGLLLDVVVGEDETLLVRRDPLLVLDLGLDVVDGVRGLHLQRDG

>peptide 4 (41 aa)
CACAFASWAWCTSSSCASWRHRGGGAPGGGWTPSGCCSRRG*

Sequence

>CNT30679489
CTTGTGCTTGTGCTTTTGCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCACCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCC
TTCTGGATGTTGTAGTCGGCGAGGATGAGACGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGG
ACTCCACCTCCAGCGTGATGGTCT