Detailed information on CNT30679064


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677669Triticum urartuSetaria viridis15.1735.1595.07142forward
CNT30522232Triticum urartuSetaria italica27.7826.0893.46260forward
CNT30640181Triticum urartuNymphaea colorata15.1729.2883.1142forward
CNT30131011Triticum urartuLolium perenne25.3238.7996.62237forward
CNT30362130Triticum urartuSorghum bicolor7.821.9989.0473forward
CNT3052469Triticum urartuAmborella trichopoda15.2824.7881.12143forward
CNT30575951Triticum urartuOryza barthii13.6829.4988.28128forward
CNT30497116Triticum urartuDigitaria exilis51.649.0492.75483forward

Expression of CNT30679064

Peptides detected in this lncRNA

>peptide 1 (54 aa)
DETQKVELYFHYLAAQDTLLSLLPNQRKRTSFTGLNSLRTVTTSDLIGRATYLI*

>peptide 2 (43 aa)
MPAEARRRARDDRVARADGLLAGRRRRGRGRRGHRRGLRADGN*

>peptide 3 (38 aa)
MTALPVRTVFLPDGDAGVAVGADTAAACARMATDDVFTL

>peptide 4 (35 aa)
RMKLKKSNCTSTIWPPKTLYCHYYQIKEKELVLQA*

Sequence

>CNT30679064
CGGATGAAACTCAAAAAGTCGAACTGTACTTCCACTATTTGGCCGCCCAAGACACTTTATTGTCACTATTACCAAATCAAAGAAAAAGAACTAGTTTTAC
AGGCTTAAACTCCTTGCGAACTGTAACCACTTCGGACTTAATCGGGCGCGCCACGTACTTAATCTAGCAGTTTGTGCGAAACGTGTCCTACAATTATTTT
TTCTTTTTTTTGGCTTGAGAAAAGAAGCACAAAATTTCGCCACTTGGTGCGGATGACGATCGATCAGGGTTTGCGACCTCGCCGGAGGGCCGGCCATTTG
GTGATCATGCGAGTCCGACGAGCTTCTCGCTGAGCTCCCAGACCTTCCTGGCCTTCTCGGTGTCGCTGGCCTCCTCGGAGAGCTGGTTCTCGAAGGACGC
CGAGTTCTTGTTCCAGCTCCAGTAGACGCCGGACTTGGTGAGGCTGGGCTCGCTGACGACCTGCGCCAGCCTCTTGCCGGCCTCCTCCTCGGACACGTAC
CCCTTGGTGATGTACTTCTGGAACGGCGCTTGGAGGGGTAGTCGGAGGCCTTGAGGTCCTCGAGGAGCTCGCGGGCGAGGAGGAAGTGGCCGAGGTGGTT
GACGCCGACGCTCATCTCGAAGCCGTCCGCGGTGAAGGAAGGCTCCTTGGCGGTGGGCTGGTACACGGCGGCGTTGCAGACGACGACGTCGATGGGCATG
TCGAGCTGGCGCACGTTCTTGACGAACTGGCGGACGCTGTCGAGGGAGGCCAGGTCCAGGTGCACGATGGTGTAGCTGCCCTTGGGCATGCCGGCCGAGG
CCCGACGACGCGCCCGTGATGACCGCGTTGCCCGTGCGGACGGTCTTCTTGCCGGACGGCGACGCCGGGGTCGCGGTCGGCGCGGACACCGCCGCGGCCT
GCGCGCGGATGGCAACTGACGACGTGTTCACCCTCT