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Detailed information on CNT30678966


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690730Triticum urartuOryza sativa16.5724.3689.4185forward
CNT30672671Triticum urartuSetaria viridis17.1521.7392.0588forward
CNT30520803Triticum urartuSetaria italica18.3221.2294.6894forward
CNT30286278Triticum urartuTriticum aestivum40.7471.5896.17209forward
CNT30383152Triticum urartuTriticum turgidum85.3870.0895.43438forward
CNT30552437Triticum urartuOryza glaberrima16.5720.1489.4185forward
CNT30655558Triticum urartuTriticum dicoccoides57.1277.1197.61293forward
CNT3015104Triticum urartuZea mays17.5427.2791.1190forward
CNT30719808Triticum urartuTriticum spelta57.1268.7897.61293forward
CNT30595633Triticum urartuOryza meridionalis16.5726.1589.4185forward
CNT30101935Triticum urartuOryza rufipogon17.7421.2686.8191forward
CNT30574749Triticum urartuOryza barthii16.5722.4989.4185forward
CNT30115808Triticum urartuOryza nivara16.5720.1489.4185forward

Expression of CNT30678966

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MTVLFYLARARAHAAASGTDMLGGGDDDCLLLLLILVLASAGRPPGRRLSCSCSRSSRTRCRTCSRRRTRSCRRSKTSSLAVGGGEGRKLRTERML*

>peptide 2 (77 aa)
MRRLVVLICWVVVMMIACFSSSSSCSPLPAGLLGAGSVAAAAGAAARGAALAAGAAPAVAAAARHPPWLWVVAREGS*

Sequence

>CNT30678966
TTTAGTTCTTAGCAGAGGCGTTCAGATTCAGAGACAGTTGGAGAACAGAGACAGGATCGTTCAAAGTTGAGGCGCCATATATTCACTAGAAGTGGAGGCA
TGAGGAGGGACACTGGTCGAACACTACACGCGAGGCGTACAGAACTAAGGAACACATGACGGTTTTATTTTATTTAGCGCGCGCGCGAGCGCATGCGGCG
GCTAGTGGTACTGATATGCTGGGTGGTGGTGATGATGATTGCTTGCTTCTCCTCCTCATCCTCGTGCTCGCCTCTGCCGGCCGGCCTCCTGGGCGCCGGC
TCAGTTGCAGCTGCAGCAGGAGCAGCCGCACGCGGTGCCGCACTTGCAGCCGGCGCCGCACCCGCAGTTGCCGCCGCAGCAAGACATCCTCCTTGGCTGT
GGGTGGTGGCGAGGGAAGGAAGCTAAGGACTGAGAGGATGCTGTGAGGAGTGAGGAGGCTGGTGTGCTTGGTGAGGAGGAAGAAGGCGAGGAGGGGGCCT
ATAAATAGGCCGG