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Detailed information on CNT3067891


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENI4|RPOB_ORYNI, E-value = 3e-95

BLAST vs NONCODE:
NONMEST001055, E-value = 7e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3052251Leersia perrieriAmborella trichopoda69.527.3480.05431forward
CNT30102095Leersia perrieriOryza rufipogon11.1329.4997.169forward

Expression of CNT3067891

Peptides detected in this lncRNA

>peptide 1 (57 aa)
PIRKILERKNISNMNLFPCNSQEFLTVSSWNNLFFLNTPIQGQRISCCYHIIFISIW*

>peptide 2 (40 aa)
MDISAPKTCSSPRQSSRTQTTHFSPMNSLCQWIGLIKNLR*

Sequence

>CNT3067891
CCCTATTAGAAAAATATTGGAAAGGAAAAATATTTCTAACATGAATTTGTTCCCATGCAATAGTCAAGAATTCTTGACAGTATCTAGCTGGAACAACCTG
TTCTTCCTGAATACCCCGATTCAAGGACAAAGAATTTCCTGCTGCTATCATATAATATTCATCTCTATTTGGTGATAAATAAACCACCTGTGTCTCTTTT
TTTTTCCTCAGATATTTCATAAAACGGACTCTCTACGGATCCCCACCAATGATCAATTCTCGCATGAATAGCTAAAGATCTATTAAGTCCAACGTTAATT
CATTCGGACGTGTCAATTAGAAAAATACGCGCATAGTGACTCGGATGGATATCTCGGCTCCGAAAACTTGCAGTTCTCCCCGTCAATCCTCCAGGACCCA
AACAACTCACTTTTCGCCCATGAACAGTTTGTGTCAATGGATTGGTTTGATCAAAAACTTGAGATAAGGGGTATGTCCCAAAAAAGGTCTCATAAGTAGT
TATTAATAAAATCGAGGTTGAAGTTGGAGTTACCAAAGTTTGCGGAGTCGGTTTCGATTGACGTATGAATACTCTACGGATAGTTTTTTGAACCGCGTGT
TGTAAACGACCAAGAGCCAG