Detailed information on CNT30678882


BLAST search results

BLAST vs Swiss-Prot:
sp|O65857|GSTF1_ORYSJ, E-value = 4e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674534Triticum urartuSetaria viridis26.7925.9686.62142forward
CNT30440763Triticum urartuAegilops tauschii19.8129.0184.76105forward
CNT30132314Triticum urartuLolium perenne29.8122.991.14158forward
CNT30595599Triticum urartuOryza meridionalis25.8534.1683.94137forward
CNT30109709Triticum urartuOryza longistaminata23.5819.7288125forward

Expression of CNT30678882

Peptides detected in this lncRNA

>peptide 1 (98 aa)
YKTLFHLESFHNHTYDTQAQKLHAGAIPATQAHCLIRDTNKKTPRRSVIGIGSHDAKSRLANHGFLGTICAASFLTAGLAMSLSHQALTCGYESKSAA*

>peptide 2 (29 aa)
MAASLRLPSLSRSTSFFLYLRSTYFAIARD

>peptide 3 (47 aa)
IRHYSISRVFTTTHTIRKHKNCTLVQFQPHKLIALFATPTRKRHADQ*

Sequence

>CNT30678882
TTATAAGACATTATTCCATCTCGAGAGTTTTCACAACCACACATACGATACGCAAGCACAAAAACTGCACGCTGGTGCAATTCCAGCCACACAAGCTCAT
TGCCTTATTCGCGACACCAACAAGAAAACGCCACGCAGATCAGTGATCGGAATCGGATCCCACGATGCGAAATCCCGCCTAGCAAATCACGGCTTCTTGG
GAACCATTTGTGCGGCGAGCTTCTTGACGGCCGGCCTCGCCATGAGCCTCTCCCACCAAGCCTTGACGTGCGGGTACGAGTCGAAGAGCGCCGCGTGAGG
CGTGGCCATGAAGTAGAAGGTGTAGGGGAAGTGGTTGAGGTCGGCGAAGCTGACGAAGTCCCCGGCGAGGCACTCGTACACGATCGGCGAGATGGCCGGG
TTGTAGGTGTGCGCGTCGACCTCCGTCCATACATCCACCATGGCGGCCTCCTTGAGGTTGCCTTCCCTCAGCAGGTCGACTTCGTTCTTCTTGTACTTGC
GAAGCACGTACTTTGCAATTGCGCGTGACT