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Detailed information on CNT30678839


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519050Setaria viridisJuglans regia65.1179.2995.63892forward
CNT30619379Setaria viridisSesamum indicum56.5799.3695.23775forward
CNT30200729Setaria viridisPisum sativum65.1136.6895.18892forward
CNT3048154Setaria viridisPrunus dulcis65.1185.0395.52892forward
CNT30285964Setaria viridisTriticum aestivum47.3755.6198.92649forward
CNT30224448Setaria viridisHordeum vulgare56.9398.6197.05780forward
CNT30544510Setaria viridisBrassica napus65.1155.7595.18892forward
CNT30239033Setaria viridisBrassica oleracea65.1165.6895.07892forward
CNT30444212Setaria viridisAegilops tauschii65.5569.0298.78898forward
CNT30261854Setaria viridisBrassica rapa64.0982.3695.1878forward
CNT30206557Setaria viridisHelianthus annuus59.7137.9295.72818forward
CNT30365254Setaria viridisSorghum bicolor64.9698.3497.3890forward
CNT30413997Setaria viridisPapaver somniferum48.768095.51668forward
CNT3036408Setaria viridisCucumis melo65.0484.396.18891forward

Expression of CNT30678839

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMRRRHEGRAIRQVIMNHRIGGQSPRQPFI*

>peptide 2 (44 aa)
MRPSRKSGFVARISSRITTVIRVARTIKQTITDLMSHSQFHSSN*

>peptide 3 (30 aa)
MKFPKITRACRPRLYTRWIHQCSARAAQNI*

>peptide 4 (30 aa)
MKFPKITRACRPRLYTRWIHQCSARAAQNI*

Sequence

>CNT30678839
GACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTGCAATGATCT
ATCCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATATACTCGTTGGATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA
TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCTAACTACGGAGGGATGGCTCCGCATAGC
TAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA
GAGCTCTCAGTCTGTCAATCCTTGCTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGGACGTAGTCAACGCGAGCTGATGA
CTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAG
GCTATATACTCGTTGGATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAC
GGCCATAGTCCCTCTAAGAAGCTAACTACGGAGGGATGGCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATC
GCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTGCTATGTCTGGACCTGGTAAGTTTCCC
CGTGTTGAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCAC
CCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACGAAGGCCGTGCGATCCGTCAAG
TTATCATGAATCATCGGATCGGCGGGCAGAGCCCGCGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATTAGCTC
TAGAATTACTACGGTTATCCGAGTAGCACGTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTTCGAATTAGTTCATACTT
GCACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCACGTCCTC