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Detailed information on CNT30678825


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000282, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193884Setaria viridisSecale cereale97.97100.0697.871786forward
CNT30309180Setaria viridisTriticum aestivum99.8974.7897.861821reverse complement
CNT30219940Setaria viridisHordeum vulgare98.374.1496.821792reverse complement
CNT30400777Setaria viridisTriticum turgidum99.8956.297.531821forward
CNT30663154Setaria viridisTriticum dicoccoides97.81100.0696.581783reverse complement
CNT30139291Setaria viridisLolium perenne100.0558.1697.71824forward
CNT3018182Setaria viridisZea mays100.0591.9899.891824forward
CNT30585666Setaria viridisEchinochloa crusgalli97.04100.0698.641769forward
CNT30595147Setaria viridisEragrostis curvula93.535298.591705forward
CNT30557558Setaria viridisPanicum hallii100.0558.0798.31824reverse complement

Expression of CNT30678825

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MPSKRESSARVDYVPALCTHRPSLLPIEWSGEVFGSRRRGRFAAPDVARSPLNLII*

>peptide 2 (37 aa)
RTCYLVDPASSHMLVSKIKPCMCKYELIRTVKLRMAH*

>peptide 3 (33 aa)
MPTRDQRVLLIGPRWHLMRNQSLWVPGGVWSQG*

>peptide 4 (31 aa)
MKDEQLRKHLPRMFSLIKNESWGLEDDQIPS*

>peptide 5 (33 aa)
MAVLIGGAICLVNSVNERDLSLLTSYAEPSLRS*

Sequence

>CNT30678825
GAGGACGTGCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACTAATTCGAACTGTGAAACTG
CGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTACGTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAACCCCGACTTC
CGGGAGGGGCGCATTTATTAGATAAAAGGCTGACGCGGGCTCTGCCCGCCGATCCGATGATTCATGATAACTTGACGGATCGCACGGCCTTCGTGCCGGC
GACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAG
AGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAATACCG
GGCGCGTTAGTGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG
CTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGCCGGCCGGTCCGCCTCACGGCGAGAACCGACCGGCTCG
ACCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGCCTCCGGCGCCGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCT
CTGGATACATTAGCATGGGATAACATCATAGGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGGCATTC
GTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGG
GGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAGCGGGTGTTACTAATAGGACCCCGCTGGCACCTTATGA
GAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGCGTGGAGCCTGCGGCTTAA
TTTGACTCAACACGGGGAAACTTACCAGGTCCAGACATAGCAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTC
TTATTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCCATCCCTCCGTAGTTAGCTTCTTAG
AGGGACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCA
ACGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCC
TAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGTGAAGTGTTCGGA
TCGCGGCGACGGGGGCGGTTCGCCGCCCCCGACGTCGCGAGAAGTCCATTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGT
GAACCTGCGGAAGGATCATTGCC