Detailed information on CNT30678781


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 8e-42

BLAST vs NONCODE:
NONGMAT000220, E-value = 2e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30174517Setaria viridisVigna angularis31.2268.6684.06138forward

Expression of CNT30678781

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLPSTSLTEEGVESIITSSNGLVAGHLAISL

>peptide 2 (98 aa)
PRHTGLTQQQEASSSTRHPRLLPRPRRTQRRPPRSPSRAQPGWCRWGAQCQGSGGRCHRWPHCQAEQQHQCARGGSGWTGHCCMAQPLRWRPGEMGTQ*

>peptide 3 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

Sequence

>CNT30678781
ACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCCT
CGTAGTCCTTCTCGAGCGCAGCCAGGTTGGTGTAGGTGGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGCAGAAC
AGCAACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACTGAGGTGGAGACCTGGGGAGATGGGTACACAGTGAAC
CCGAGCTTGGACTTCTTGCCATAGTCAACAAAAACAGCACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTC
CTCCAACGGTCTTGTCGCCGGGCATCTGGCCATCAGCCTGAA