Detailed information on CNT30678731


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MTN7|PSAB_OENEH, E-value = 5e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617597Setaria viridisSesamum indicum66.5721.2291.27229forward
CNT30202037Setaria viridisPisum sativum87.799.2890.4302forward
CNT30560220Setaria viridisActinidia chinensis88.6619.6191.48305forward
CNT30134105Setaria viridisLolium perenne57.2717.5395.43197forward
CNT30682212Setaria viridisTriticum urartu97.3810.1693.43335forward
CNT30430934Setaria viridisPapaver somniferum88.664.6791.48305forward
CNT3057627Setaria viridisAmborella trichopoda88.3753.6285.86304forward
CNT30585620Setaria viridisEchinochloa crusgalli97.386.5395.52335forward
CNT30113859Setaria viridisFicus carica21.84.378875reverse complement

Expression of CNT30678731

Peptides detected in this lncRNA

>peptide 1 (47 aa)
YPLQEIKNINLVAQTRCPNKNIQAHTDKLFIPKGLYPLICCEEFNYR*

Sequence

>CNT30678731
TACCCGTTGCAGGAAATTAAGAACATAAATCTAGTAGCCCAAACAAGATGTCCAAATAAGAACATCCAAGCCCATACTGATAAACTATTCATCCCAAAAG
GATTATATCCTTTGATATGTTGTGAAGAGTTTAACTATAGGTAATCTCTTAACCATCCGATCAAATAAGTGGAGGATTCATTAAGTTGTGAAACGTTGCC
CTGCCATAATGTGATGTGTTTCCAATGCCAATAAAAAGTAACCCATCCAATGGTATTTAACATTCAGAAAACTGCCAAATAAAACGCGTCCCAAGAAGAA
GTATCAAAAGTACCACCACGCCCTGAGCTGCCGCAAGGAAAACT