« Back to Setaria viridis search


Detailed information on CNT30678721


BLAST search results

BLAST vs Swiss-Prot:
sp|P11139|TBA1_ARATH, E-value = 3e-63

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30340361Setaria viridisEragrostis tef27.7442.6491.93223forward

Expression of CNT30678721

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

>peptide 2 (30 aa)
MLPSTSLTEEGVESIITSSNGLVAGHLAISL

>peptide 3 (34 aa)
MPHLNPVGHQSTNWMVRLVLMVGRSMSRERRQMS*

>peptide 4 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

>peptide 5 (47 aa)
RCCKRHTTTDNSSNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

Sequence

>CNT30678721
TAAGATGTTGTAAACGACATACGACGACAGATAACAGTTCAAACCGACACACCGACACACAACAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGAT
AACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCC
TCGTAGTCCTTCTCGAGCGCAGCCAGGTCCTCACGGGCCTCAGAGAACTCGCCCTCCTCCATGCCCTCACCCACGTACCAGTGAACGAAGGCACGCTTGG
CGTACATGAGGTCAAACTTGTGGTCGATGCGGGAGAACACCTCGACCACGCTGGTGGAGTTGGAGATCATGCACACGGCACGCTGCACCTTGGCCAGGTC
ACCGCCAGGCACCACGCTGGGGGGCTGGTAGTTGATGCCGCACTTGAACCCAGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTG
GGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGCAGAACAGCAACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACA
GGACACTGTTGTATGGCTCAACCACTGAGGTGGAGACCTGGGGAGATGGGTACACAGTGAACCCGAGCTTGGACTTCTTGCCATAGTCAACAAAAACAGC
ACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCTCCAACGGTCTTGTCGCCGGGCATCTGGCCATCAGCC
TGAA