Detailed information on CNT30678664


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30391333Setaria viridisTriticum turgidum96.5260.1798.34361forward
CNT30104431Setaria viridisOryza rufipogon90.9152.4797.65340forward
CNT30604015Setaria viridisOryza punctata96.5274.7498.89361forward
CNT30551087Setaria viridisOryza brachyantha67.1184.2397.21251forward

Expression of CNT30678664

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MLSAVILSTLGYPAFTVGTITGTPEVRPSRSSQCSNAHTGYGPNCLTTF*

>peptide 2 (51 aa)
MDRTVSRRSEPSSRTALMGEQPNPWNHLQLQVAKSRHRGAKPSRRCGLLGV*

>peptide 3 (48 aa)
LPRTRRCLGCATGGSREVGGDSTHLRVGLLLICFQQLSSPHLATQRLP*

>peptide 4 (66 aa)
CREPVAVSAVLPEALGKSEETVLILGWAYYLYAFSSYPLHTWLPSVYRRHDNWYTRGASFPVLSML*

Sequence

>CNT30678664
TTTGCCGAGAACCCGTCGCTGTCTCGGCTGTGCTACCGGAGGCTCTAGGGAAGTCGGAGGAGACAGTACTCATCTTAGGGTGGGCTTACTACTTATATGC
TTTCAGCAGTTATCCTCTCCACACTTGGCTACCCAGCGTTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCAATGCTC
TAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCACCT
ACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGGACTCTTGGGGGTATAAA