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Detailed information on CNT30678637


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549212Setaria viridisIpomoea triloba94.5812.7394.53384reverse complement
CNT30272552Setaria viridisChenopodium quinoa79.3125.695.34322reverse complement
CNT30730494Setaria viridisCorchorus capsularis94.5843.6494.27384reverse complement
CNT30196906Setaria viridisPisum sativum78.5742.1496.24319reverse complement
CNT30294119Setaria viridisTriticum aestivum6799.6396.69272forward
CNT30220355Setaria viridisHordeum vulgare70.9496.3297.57288reverse complement
CNT30384830Setaria viridisTriticum turgidum94.3365.2597.65383reverse complement
CNT30569398Setaria viridisActinidia chinensis94.5819.6594.79384reverse complement
CNT30552690Setaria viridisOryza glaberrima94.3325.0297.65383reverse complement
CNT30442196Setaria viridisAegilops tauschii94.3345.1798.17383forward
CNT30657980Setaria viridisTriticum dicoccoides91.3890.9397.57371forward
CNT30215429Setaria viridisHelianthus annuus94.5854.5594.79384reverse complement
CNT30688674Setaria viridisTriticum urartu94.3329.0898.43383reverse complement
CNT30347837Setaria viridisEragrostis tef94.3349.6897.91383forward
CNT30620564Setaria viridisCajanus cajan93.847.3694.23381forward
CNT30354697Setaria viridisLactuca sativa51.2329.4696.15208reverse complement
CNT30410880Setaria viridisPapaver somniferum94.5842.3894.79384reverse complement
CNT30642274Setaria viridisCannabis sativa79.5639.5390.71323forward
CNT3036965Setaria viridisCucumis melo94.5852.7594.79384reverse complement
CNT30104374Setaria viridisOryza rufipogon94.3328.8497.65383forward

Expression of CNT30678637

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLSAVILSTLGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF*

>peptide 2 (48 aa)
LPRTRRCLGCATGGSREVGGDSTHLRVGLLLICFQQLSSPHLATQRLP*

>peptide 3 (65 aa)
CREPVAVSAVLPEALGKSEETVLILGWAYYLYAFSSYPLHTWLPSVYRRHDNWYTRGASFPVFSY*

>peptide 4 (55 aa)
MDRTVSRRSEPSSRTALMGEQPNPWNHLQLQVAKSRHRGAKPSRRCGLLGTSTPHV

Sequence

>CNT30678637
TTTGCCGAGAACCCGTCGCTGTCTCGGCTGTGCTACCGGAGGCTCTAGGGAAGTCGGAGGAGACAGTACTCATCTTAGGGTGGGCTTACTACTTATATGC
TTTCAGCAGTTATCCTCTCCACACTTGGCTACCCAGCGTTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCTTCTCGTACTAG
GGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACA
GCCCAACCCTTGGAACCACCTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGGACTCTTGGGGACATCAACACCC
CATGTA