Detailed information on CNT30678616


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522541Setaria viridisSetaria italica53.2853.83100260forward
CNT30299532Setaria viridisTriticum aestivum28.6927.4599.29140forward
CNT30393705Setaria viridisTriticum turgidum28.6915.3899.29140forward
CNT30247647Setaria viridisAvena sativa28.6922.7396.43140forward
CNT30499040Setaria viridisDigitaria exilis27.4619.7194.78134forward
CNT30558912Setaria viridisPanicum hallii13.7326.0798.5167forward

Expression of CNT30678616

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MAIVGLILGRAGAASWSEAKSKMARRDEEWRARRRHAAKR*

>peptide 2 (37 aa)
MSKVFLPVNLTSMGLTFLPMLRKFCPTPCLPALTFSG*

>peptide 3 (66 aa)
VINVNLGIASPKSTFTYSSMHHLHDHQENLIIVIKLHIDRPSINHPTPAKRKRWMRSLRCRRCSCR*

Sequence

>CNT30678616
ACGTAATTAACGTTAACCTGGGCATCGCATCACCAAAATCAACATTTACATATAGTTCCATGCATCACCTCCACGATCACCAAGAAAACCTGATTATAGT
AATAAAATTACATATCGATCGACCCTCCATCAACCACCCAACACCAGCTAAGAGAAAGAGATGGATGAGATCACTTAGATGTCGAAGGTGTTCTTGCCGG
TGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGCCCCACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTC
CTTGGGGTGGAGGTGGCGCGTCGCGGCGGAGGCTTGCGTGGCCATGGCCATCGTCGGCTTGATTCTCGGACGAGCTGGTGCGGCTTCTTGGAGCGAAGCT
AAGAGCAAGATGGCGAGGAGAGATGAGGAGTGGAGGGCGCGGCGCAGGCACGCAGCTAAGAGGTGATGCTCTGCTTTGGTTGGAGACC