CANTATAdb - search

Detailed information on CNT30678594

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 3e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30720142	Setaria viridis	Triticum spelta	63.09	100.28	85.52	359	forward

Expression of CNT30678594

Peptides detected in this lncRNA

>peptide 1 (68 aa)
PRHTGLTQQQEASSSTRHPRLLPRPRRTQRRPPRSPSRAQPGPHGPQRTRPPPCPHPRTSERRHAWRT*

>peptide 2 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

>peptide 3 (29 aa)
MPHLNPVGHQSTNWMVRLVLMVATAACSW*

Sequence

>CNT30678594
ACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCCT
CGTAGTCCTTCTCGAGCGCAGCCAGGTCCTCACGGGCCTCAGAGAACTCGCCCTCCTCCATGCCCTCACCCACGTACCAGTGAACGAAGGCACGCTTGGC
GTACATGAGGTCAAACTTGTGGTCGATGCGGGAGAACACCTCGACCACGCTGGTGGAGTTGGAGATCATGCACACGGCACGCTGCACCTTGGCCAGGTCA
CCGCCAGGCACCACGCTGGGGGGCTGGTAGTTGATGCCGCACTTGAACCCAGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTGG
CAACAGCAGCCTGCTCATGGTAGGCCTTCTCGGCAGAGATGACTGGTGCATAGGATGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAAGTTGGTCTG
GAACTCGTTCACATCCACGTTCAGAGCACCATCGAACCTCAGGGAGGCAATCAGAGATGAGATGACCTG