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Detailed information on CNT30678576


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30632593Setaria viridisVigna unguiculata69.1720.7395.71350reverse complement
CNT30635645Setaria viridisCapsicum annuum40.9133.4490.82207reverse complement
CNT30400759Setaria viridisTriticum turgidum69.3729.897.15351reverse complement
CNT30569653Setaria viridisActinidia chinensis62.4547.0993.99316forward
CNT30147394Setaria viridisMedicago truncatula69.1717.5795.14350reverse complement
CNT30440683Setaria viridisAegilops tauschii69.1736.2397.43350reverse complement
CNT30247816Setaria viridisAvena sativa68.5816.6197.41347reverse complement
CNT3081478Setaria viridisBrassica juncea69.1730.2292.29350reverse complement
CNT3016633Setaria viridisZea mays71.9419.0593.96364forward
CNT30229838Setaria viridisAnanas comosus30.4334.7697.4154forward
CNT30218527Setaria viridisKalanchoe fedtschenkoi55.7318.9495.74282forward
CNT3067373Setaria viridisLeersia perrieri41.1168.8797.6208reverse complement
CNT30203595Setaria viridisHelianthus annuus68.9719.0595.99349reverse complement
CNT30721611Setaria viridisTriticum spelta31.4234.4993.08159forward
CNT30595506Setaria viridisOryza meridionalis60.0827.6497.04304forward
CNT30420891Setaria viridisPapaver somniferum69.1713.0390.57350forward
CNT30323793Setaria viridisAsparagus officinalis21.5434.4995.41109reverse complement
CNT3037914Setaria viridisCucumis melo25.696.1190130reverse complement
CNT30151602Setaria viridisBrachypodium distachyon31.4231.7497.48159forward
CNT30104648Setaria viridisOryza rufipogon56.5249.0696.15286forward
CNT30582488Setaria viridisEchinochloa crusgalli69.1728.8397.43350reverse complement
CNT30495774Setaria viridisDigitaria exilis49.2162.8896.39249forward

Expression of CNT30678576

Peptides detected in this lncRNA

>peptide 1 (87 aa)
PHLPLVSHWQSLVSAARTFFFVSEWGAYYYHYVPHHRAAGLHAESSSVANSTLYRIKPHAPPLVQAPVNSFEFQSCDCTPQAECFTR*

>peptide 2 (56 aa)
SPPSSSISLAVPRECGTHLFLCFGVGRVLLPLRTTPPGGWPSCRVFLRRQLDVVSN*

>peptide 3 (50 aa)
MLSHPSVGRDPKSCLRFWRSFVDLRISPLHTKFHSPLSHSSELVSRAFRHF

>peptide 4 (83 aa)
MPSLPPSPTRRCIELNHMLHRLCRPPSIPLSFSLATVLHRRSVSHVSWAPDPRRPRANTHRLQHGLPGYLILFAPNAFASQRW*

Sequence

>CNT30678576
ATCCCCACCTTCCTCTAGTATCTCACTGGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTTCTTTGTTTCGGAGTGGGGCGCGTACTATTACCACTACGT
ACCACACCACCGGGCGGCTGGCCTTCATGCCGAGTCTTCCTCCGTCGCCAACTCGACGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCC
CCCGTCAATTCCTTTGAGTTTCAGTCTTGCGACTGTACTCCACAGGCGGAGTGTTTCACACGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAAC
ACTCATCGTTTACAGCATGGACTACCAGGGTATCTAATCCTGTTCGCTCCCAATGCTTTCGCATCCCAGCGTTGGTAGGGACCCAAAGAGCTGCCTTCGC
TTTTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCC
ACTTTT