Detailed information on CNT30678571


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XNX6|SUS7_ORYSJ, E-value = 8e-19

BLAST vs NONCODE:
NONBNAT000214, E-value = 1e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30559910Setaria viridisActinidia chinensis37.3166.0684.72144forward
CNT3061548Setaria viridisArabidopsis lyrata23.5811.1186.8191forward
CNT30100738Setaria viridisOryza rufipogon51.8153.6291.5200forward
CNT30116122Setaria viridisOryza nivara35.4951.1294.89137forward
CNT30333478Setaria viridisCynara cardunculus20.7315.5386.2580forward

Expression of CNT30678571

Peptides detected in this lncRNA

>peptide 1 (64 aa)
TAGSRASPVAGVLLALLKEVHKQRRGLVALVRVNVVAGHAVHDDLSWTTVGGSECGQTAGQTSS*

>peptide 2 (42 aa)
MDMSAPGETMLNFGSNTSIPWTTRYRPGIVKAMWDSYWPTVSL

>peptide 3 (42 aa)
RRVSRLSSGWSPPCTSQRSPQAAPRPCRPGTGQCGSRTRRAR*

>peptide 4 (35 aa)
PPGLAPLQWLESSLHFSKKSTSSAEALSPWYGSMW*

Sequence

>CNT30678571
ACCGCCGGGTCTCGCGCCTCTCCAGTGGCTGGAGTCCTCCTTGCACTTCTCAAAGAAGTCCACAAGCAGCGCCGAGGCCTTGTCGCCCTGGTACGGGTCA
ATGTGGTAGCCGGACACGCCGTGCACGATGATCTCAGCTGGACCACCGTAGGCGGTAGCGAATGTGGGCAGACCGCAGGTCAAACATCTTCTTGAACTCA
GCCTGCTCCTCCTTGTCCTTGGAAGGCCTCTTGTGTGACTCGGTGTAAGGGAAGTAGATGGACATGTCCGCACCAGGTGAGACAATGTTGAACTTCGGGT
CAAACACATCAATACCGTGGACAACACGGTACAGACCAGGCATTGTGAAGGCCATGTGGGACTCATACTGGCCAACAGTGTCCTTG