Detailed information on CNT30678565


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535895Setaria viridisEucalyptus grandis15.5825.8186.01143forward
CNT30282912Setaria viridisChenopodium quinoa20.3717.4491.98187forward
CNT30505351Setaria viridisNicotiana attenuata20.485.4190.96188forward
CNT30179912Setaria viridisSecale cereale20.711.1496.84190forward
CNT30222903Setaria viridisHordeum vulgare20.766.6795.26190forward
CNT30554216Setaria viridisOryza glaberrima19.1726.9997.73176forward
CNT30145240Setaria viridisMedicago truncatula13.8322.8491.34127forward
CNT30668721Setaria viridisTriticum dicoccoides25.3864.7296.14233forward
CNT30598585Setaria viridisFraxinus excelsior20.4822.0489.89188forward
CNT3066861Setaria viridisLeersia perrieri10.4634.4187.596reverse complement
CNT30205079Setaria viridisHelianthus annuus20.482689.89188forward
CNT30689283Setaria viridisTriticum urartu20.77.4996.84190forward
CNT30409854Setaria viridisPapaver somniferum21.5729.8689.39198forward
CNT3058165Setaria viridisAmborella trichopoda6.122.1387.556reverse complement
CNT30121210Setaria viridisCitrus clementina20.594.8592.06189forward

Expression of CNT30678565

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MQSFFNANRFNLIISFRLSLRSCLTCKKSPLLKCSQNS*

>peptide 2 (36 aa)
MGRKRTSVSSKLIMLKSALPGVPGVLSVPINTKFPE*

Sequence

>CNT30678565
ATATTTGTAATAATTTGGAAATGCGGGAAAAGAGGTGTTTTTTAAAGCACTTCTTTTTGCATATAAATATTCAATCTCACTAAAGAAAAATGTTTTAAGT
AAAACATTTTTTTTCTTTTTAAAAAAGAAATCGAAATTCTTTCGAAATCTAATGATTAGAAGAGCGGCGGATAATAAGGATCCGCACAAAAGAGTTGCAT
AGCTTAGCGATTATCTAATAAATCTTTTAACACTCCCTTTCCAAAAAAAATCAATACACCAACCACTACAGTTAGATTTATTAGATTTGTTGCTAAAATA
TCGGTATTAAGCCCGAAACTCCCAGCGAATGGCCTGTGAGCTAAAAAAACGAAAGAATAGGTTACATTTTTCATATGCTCTCCTCTTATAGATAGGACGA
ACAAAGAAGAAAGTTTTTCGATCACTTACTTCGCTCGCCCTTTTTTGATCGGTTTTTTTAATGCAATCTTTTTTTAATGCAAATAGATTTAATCTAATAA
TTTCTTTTAGATTAAGTCTTAGGTCTTGTTTGACCTGTAAAAAATCTCCTTTGTTGAAATGTTCCCAAAATTCCTAAAATAAAAGAAAAAGAGTTTCCAC
TGTCCTAAACTAAGAATGGGAAGGAAGAGGACGAGCGTATCCTCTAAATTGATCATGCTCAAATCAGCCCTTCCTGGGGTTCCTGGGGTATTGTCTGTCC
CGATAAATACAAAATTCCCGGAATAATATAATAAAAGACGAAATATAGGAAGAACCCCTATTGAAATCGAACTAATTCAAATCCAATAGGAATCAAATCA
AGATATACAATTGATAACAATATGCTGCATAGAATTAGAATTAGATATGGAATCCAGTTCTATATAGAAGGGAATTCTACATATCGGATTAGATAATGAA
TCTAACTTAGGAATAAAA