Detailed information on CNT30678563


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692523Setaria viridisOryza sativa30.955.589.2365forward
CNT30519897Setaria viridisSetaria italica78.112.8685.37164forward
CNT30640148Setaria viridisNymphaea colorata78.17.4384.15164forward
CNT30185311Setaria viridisSecale cereale75.7111.386.79159forward
CNT30295853Setaria viridisTriticum aestivum79.0524.789.16166forward
CNT30592095Setaria viridisMusa acuminata46.6733.2282.6598forward
CNT30243876Setaria viridisAvena sativa27.627.787.9358forward
CNT30663894Setaria viridisTriticum dicoccoides79.057.0689.16166forward
CNT302263Setaria viridisZea mays64.7612.1892.65136forward
CNT30228927Setaria viridisAnanas comosus75.2466.6788.61158forward
CNT30347744Setaria viridisEragrostis tef75.7110.1586.16159forward
CNT30369978Setaria viridisOryza glumipatula54.7615.3189.57115forward
CNT30575497Setaria viridisOryza barthii79.0513.2490.36166forward
CNT30116279Setaria viridisOryza nivara39.524.1890.3683forward

Expression of CNT30678563

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MTPGQKASCSFSVKKLSMFRLSTMRPTGCSGITSSGQVLVT

>peptide 2 (68 aa)
PLPGLLEVVLLLNHSLQQLVVGVVDPRHDDARAEGELLVLGEEVVDVSVEHHAPHGLQRDHVLGPGLGH

Sequence

>CNT30678563
ACCTCTCCCCGGGCTGCTTGAAGTTGTTCTCCTTCTTAATCATAGTCTGCAGCAGCTTGTCGTCGGAGTAGTAGATCCCCGGCACGATGACGCCCGGGCA
GAAGGCGAGCTGCTCGTTCTCGGTGAAGAAGTTGTCGATGTTTCGGTTGAGCACCATGCGCCCCACGGGCTGCAGCGGGATCACGTCCTCGGGCCAGGTC
TTGGTCACGT