Detailed information on CNT30678518


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223741Setaria viridisHordeum vulgare21.527.1885.85106forward
CNT30361046Setaria viridisSorghum bicolor26.5721.0393.13131forward

Expression of CNT30678518

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRVEMNSANAALRAPGWYTSSWLPTAILLIGIFTAL*

>peptide 2 (52 aa)
LDDKYSRPNAQILEKQTGSGIHGGDYSSNLMRLIEANHASGRSGGVRFMTTR*

>peptide 3 (49 aa)
MQSTRCEKTNQTAASTDQTDGTGRCARRRRRRLPKPQLSSRCPGRRRRR*

>peptide 4 (35 aa)
MAPDGDPVDRHFHCPLALSLSNHRRRRLCLEDEMRW

Sequence

>CNT30678518
ACTTGGATGATAAATACTCGCGGCCAAATGCACAAATTTTAGAGAAGCAAACTGGGTCCGGAATTCACGGCGGTGATTACAGTTCCAACTTGATGCGACT
GATCGAAGCAAACCATGCGAGCGGGCGCAGCGGCGGAGTTCGGTTCATGACTACACGGTGATGATGATGGGCGGCGATGCAAAGCACGCGATGCGAGAAA
ACTAATCAAACGGCGGCGAGCACTGATCAAACGGACGGAACCGGCCGCTGCGCGCGACGTCGTCGACGGCGGCTACCGAAGCCTCAGCTTAGTAGTCGGT
GCCCTGGCCGGCGAAGACGAAGATGAGGGTGGAGATGAACTCAGCGAACGCCGCCTTGAGGGCACCCGGGTGGTACACCTCCTCATGGCTCCCGACGGCG
ATCCTGTTGATCGGCATTTTCACTGCCCTCTAGCTCTCTCACTCTCTAACCACAGAAGAAGACGACTGTGCTTGGAGGATGAGATGCGGTGGT