CANTATAdb - search

Detailed information on CNT30678489

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30522214	Setaria viridis	Setaria italica	65.29	50.45	99.49	395	forward

Expression of CNT30678489

Peptides detected in this lncRNA

>peptide 1 (52 aa)
TKMNATLISETATKAGAFIEGATSIHPGNKGAPMTDCTHTPHASPTTKSTQN*

>peptide 2 (55 aa)
MVRYLSAYSISRYRRVSRLSSGWSPPCTSQRSPQAAPRPCRPGTGQCGSRTRRAR*

>peptide 3 (30 aa)
MLLLFQKRQPRPVRLLKEQHPSIQETREHP*

Sequence

>CNT30678489
CACAAAGATGAATGCTACTCTTATTTCAGAAACGGCAACCAAGGCCGGTGCGTTTATTGAAGGAGCAACATCCATCCATCCAGGAAACAAGGGAGCACCC
ATGACCGACTGCACACACACACCCCATGCATCCCCAACTACCAAATCAACTCAAAACTAGCAGCAACGCCCACATCAATGGAAGACCTTGATTCTTGATG
CCCGCCTAGGAAAACCAAACTCTTCTTCTTTTGGCCTCAGAAATAAGGAAGGAACCCAGGAAAAGACACGACTTCAAGTGCTCCCTTCTTTCAGGCCCCG
GCCGCCGCATCACTTGCTGGAGGGCTCTCCCTCCACGGCCAACGGCACCGTGCTGGCCATGGTGCGGTACTTGAGCGCGTACAGCATCTCCAGGTACCGC
CGGGTCTCGCGCCTCTCCAGTGGCTGGAGTCCTCCTTGCACTTCTCAAAGAAGTCCACAAGCAGCGCCGAGGCCTTGTCGCCCTGGTACGGGTCAATGTG
GTAGCCGGACACGCCGTGCACGATGATCTCAGCTGGACCACCGTAGGCGGTAGCGAATGTGGGCAGACCGCAGGTCATGGCCTCAACCACAGTCAGAGTT
AGGGT