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Detailed information on CNT30678405


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 2e-77

BLAST vs NONCODE:
NONGMAT000220, E-value = 2e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30445136Setaria viridisSaccharum spontaneum48.8548.4493.55341forward
CNT30606894Setaria viridisGossypium raimondii47.9991.7885.97335forward
CNT30726253Setaria viridisLupinus angustifolius48.4292.8684.62338forward

Expression of CNT30678405

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

>peptide 2 (42 aa)
MRSRHRSTKTARGTCFPAPVSLKKVLKASSPPPTVLSPGIWPS

>peptide 3 (28 aa)
MLPSTSLTEEGVESIITSSNGLVAGHLAI

>peptide 4 (57 aa)
SRTKQVSYNIRCCKRHTTTDNSSNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

Sequence

>CNT30678405
GAAGCAGGACTAAACAAGTTTCTTACAACATAAGATGTTGTAAACGACATACGACGACAGATAACAGTTCAAACCGACACACCGACACACAACAAGATAA
GATAGGAGCCACTCGGGCAGATCATAGGATAACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGTCTCCTTCC
TCGCCCTCGTCGAACTCAGCGCCGACCTCCTCGTAGTCCTTCTCGAGCGCAGCCAGGTTGGTGTAGGTGGGGCGCTCAATGTCAAGGGAGCGGCGGCAGA
TGTCATAGATGGCCTCATTGTCAAGCAGAACAGCAACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACTGAGGT
GGAGACCTGGGGAGATGGGTACACAGTGAACCCGAGCTTGGACTTCTTGCCATAGTCAACAGACAGACGCTCAAGGAGGAGAGAACCAAGACCAGAGCCT
GTTCCTCCACCAACAGCATTGAAGACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAAGGCACAGGTCAACAAAAACAG
CACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCTCCAACGGTCTTGTCGCCGGGCATCTGGCCATCA