Detailed information on CNT30678391


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3C7|RR12_SACHY, E-value = 1e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730546Setaria viridisCorchorus capsularis55.158.5491.62346forward
CNT30406883Setaria viridisBeta vulgaris38.2293.3986.25240forward
CNT30569656Setaria viridisActinidia chinensis60.8345.3793.19382forward
CNT30543269Setaria viridisBrassica napus60.8312.9193.46382forward
CNT30509374Setaria viridisSolanum lycopersicum33.4410585.71210forward
CNT30331679Setaria viridisDioscorea rotundata57.3252.5595.28360forward

Expression of CNT30678391

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MTYVVLKGYLYDPIDCIRPAVAIERGKYTEKTVLFNFDYLYISSFLFLDIYF

>peptide 2 (31 aa)
MRYLTPGKSLTLPPLTNTTECSCKLWPIPGI*

>peptide 3 (43 aa)
IIRLTTMLTNRLRKIGSDFAVLFSAVPRRDMSVKEVQESVFFL*

Sequence

>CNT30678391
ATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCGGTTCTTTTTTCTGCAGTACCTCGACGTGACATGAGCGTGA
AAGAGGTTCAAGAATCCGTTTTCTTTTTATAAGGGCTAAAAACGAATCACTTATTTTTTTGGCTTTTTGACCCCATATTGTAGGAACGCCCTTGTTGACG
ATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTACAGAATGT
TCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGCTTATCCATGCGGTTA
GGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCCTTTCGATGACCTATGTTGTCTTGAAGGGATATCT
ATATGATCCGATCGATTGCATAAGACCCGCAGTAGCAATAGAACGGGGAAAGTATACAGAAAAGACAGTTCTTTTCAATTTCGATTATCTATATATTAGT
TCGTTTCTATTTCTAGATATCTATTTCT