Detailed information on CNT30678383


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524653Setaria viridisSetaria italica60.5317.2896.62207forward
CNT30504983Setaria viridisNicotiana attenuata31.295.8896.26107forward
CNT30220785Setaria viridisHordeum vulgare60.5318.5796.62207reverse complement
CNT30234810Setaria viridisBrassica oleracea34.2115.4688.89117reverse complement
CNT30553404Setaria viridisOryza glaberrima53.813.0396.2184forward
CNT30154718Setaria viridisPrunus persica31.2915.4494.39107forward
CNT30574571Setaria viridisVitis vinifera30.411.6993.27104reverse complement
CNT30104484Setaria viridisOryza rufipogon35.3845.3297.52121reverse complement
CNT30576076Setaria viridisOryza barthii60.534.6196.14207forward

Expression of CNT30678383

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLSKPIHLSETEESGISCVGVKSVDLRRNAKSEGSS

Sequence

>CNT30678383
ATCATAGTCAAAATCTGAGTTTGATCCTAGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCAAATGTTGTTTTCGGGGAGCTGGGTAGAA
GGAAAAGAGGCTCCTAGCTAAAGTTGTCTCGCCCTGCTTCAAAACTACAGGGCGCGCGCTACGGCTTTGACCTAATGACCTCCATTTGCTGGAATCGGAA
TAGTTGAAAGTGGAAGTCACCCAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAA
TCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCT