Detailed information on CNT30678375


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7I2|AIR1_ARATH, E-value = 8e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30392194Setaria viridisTriticum turgidum21.621.0986.4281forward
CNT30341164Setaria viridisEragrostis tef28.2712.7991.51106forward

Expression of CNT30678375

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MRLRLTGTLRWMPRTSALIAVQRQTAASRRLRARKRASFAAIGDVWSV*

>peptide 2 (98 aa)
CNNGVVAASNSPCGNARKSTSAHSERALARLAPVSWVNLLRAGEVGRANLAALVEDEVEADGHVEVDAEDIGLNRGAEADGGVEEAQGQEEGELCSHW*

>peptide 3 (42 aa)
QQRGRCCKQFTMWKREEEYKRTFGACFSKISSCLLGQLTEGR*

Sequence

>CNT30678375
TGCAACAACGGGGTCGTTGCTGCAAGCAATTCACCATGTGGAAACGCGAGGAAGAGTACAAGCGCACATTCGGAGCGTGCTTTAGCAAGATTAGCTCCTG
TCTCCTGGGTCAACTTACTGAGGGCAGGTGAAGTCGGCCGGGCAAATCTTGCCGCACTTGTTGAGGATGAGGTTGAGGCTGACGGGCACGTTGAGGTGGA
TGCCGAGGACATCGGCCTTAATCGCGGTGCAGAGGCAGACGGCGGCGTCGAGGAGGCTCAGGGCCAGGAAGAGGGCGAGCTTTGCAGCCATTGGTGATGT
GTGGAGTGTGTGATCGTGCCGCGAGCAAGGAGTAGAGAGACACTGTGCTACTGCTTGCTCGTGTGCTTCTGGGAT