Detailed information on CNT30678371


BLAST search results

BLAST vs Swiss-Prot:
sp|A8Y9D1|RR7_LOLPR, E-value = 1e-57

BLAST vs NONCODE:
NONORUT004214, E-value = 1e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30191576Setaria viridisSecale cereale18.8785.9798.52337reverse complement

Expression of CNT30678371

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRFSPHTAPRSIISKGSFSSFESLRPSSTPSRRLTKTN*

>peptide 2 (91 aa)
MTYVVLKGYLYDPIDCIRPAVAIERGKYTEKTVLFNFDYLYISSFLFLDIYFYILVLVSSTILLVSDPGSVSSFFRDELSAPVLHFFSVDRG

>peptide 3 (89 aa)
MIKGEDCSFTKHMRIKSRLIIRRNLSRYQSPCPSFFENQKDPFRVSISSFFEFPFLHFESGLFYLRLLFLALFFIYFISIFPSSSIPIL*

>peptide 4 (50 aa)
MLTNRLRKIGSDFAVLFSAVPRRDFRYWVSHTLHMFLAIHMASSNDTSLG*

>peptide 5 (39 aa)
MISVFSFFSFLFVSKKISSDSPSIDSFPIEMYGSMCLHT*

>peptide 6 (31 aa)
MRYLTPGKSLTLPPLTNTTECSCKLWPIPGI*

>peptide 7 (29 aa)
EGLVDHDFCFLFLFLFICFEKDIVRFSFY*

>peptide 8 (64 aa)
MDPCVYIPRFCSWINENAQELYLPLPFYDALPCLDPISIGTFRVDPFLLRLVFTPILGVTLRIA*

Sequence

>CNT30678371
GAGAGGGCTTAGTTGATCATGATTTCTGTTTTCTCTTTCTTTTCCTTTTTATTTGTTTCGAAAAAGATATCGTCCGATTCTCCTTCTATTGATTCTTTTC
CGATCGAGATGTATGGATCCATGTGTCTACATACCTAGATTCTGTTCATGGATTAACGAAAATGCGCAAGAGCTCTATTTGCCTCTGCCATTCTATGATG
CTCTTCCTTGTTTAGATCCTATTTCAATCGGAACTTTCCGCGTCGATCCTTTTTTATTACGTCTTGTTTTTACTCCTATATTGGGAGTTACTCTACGTAT
TGCTTGACGTAAAACCAATAGTGGATTTGTTTCTGTCTTTTGTTGAATCTTTTTCACGGCTCGATAGAGAATTTGATAAGCCAATGATTTTTTTCCGTCT
TTCATAATACGGTTAACCACCATGTTAACTAATCGATTACGAAAAATTGGATCGGATTTTGCGGTTCTTTTTTCTGCAGTACCTCGACGTGACTTTCGTT
ATTGGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCAAATGATACAAGTCTTGGATAAGAATCTACAACGCACTAGAACGCCCT
TGTTGACGATTCTTTACTGCGACAGCATCTAGGGTTCCTCGAATAATGCGATATCTCACACCGGGTAAATCCTTAACCCTTCCTCCTCTTACTAATACTA
CAGAATGTTCTTGTAAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTT
GGGTTTTTTGGGGTTGATAGTGGAAAAGTCGACAGATAAGTCATCCTTACTGTCCCTCTACAGAACCGTACATGAGATTTTCACCTCATACGGCTCCTCG
TTCAATTATTTCGAAGGGATCCTTTTCCTCGTTCGAGAGTCTCCGCCCTTCTTCCACTCCGTCCCGAAGACTAACTAAGACCAATTGAGTCACGTTTTCA
TGTTCTAATTGAACACTTTCCATTTATGATTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCGGATCAAATCACGTCTTATAATAAGAAGAAATCTT
TCTCGGTATCAATCCCCTTGCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCATTTCTTCATTTTTCGAGTTTCCATTTCTTCATTTTG
AATCTGGGCTCTTCTATCTTCGACTTCTTTTTTTGGCTTTATTCTTTATTTATTTCATTTCGATTTTTCCCTCTTCCTCTATCCCTATCCTCTAGGTACA
GCGTTTGCATCAATAGAGAACTTTTTCCTCTGTATGAATCGATATTATTCCATTCCAATTTCTTCCCGAAACTTCCCAAGAAAAATCCCGAATTGGATCC
AAAATTGACGGGTTAATGTGAGCTTATCCATGCGGTTAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAG
ATCCTTTCGATGACCTATGTTGTCTTGAAGGGATATCTATATGATCCGATCGATTGCATAAGACCCGCAGTAGCAATAGAACGGGGAAAGTATACAGAAA
AGACAGTTCTTTTCAATTTCGATTATCTATATATTAGTTCGTTTCTATTTCTAGATATCTATTTCTATATATTAGTATTAGTTAGTAGTACTATTCTATT
AGTTAGCGATCCCGGCTCTGTGAGTTCTTTCTTCCGTGATGAACTGTCGGCACCAGTCCTACATTTTTTCTCTGTGGACCGAGGAG