Detailed information on CNT30678320


BLAST search results

BLAST vs Swiss-Prot:
sp|P49036|SUS2_MAIZE, E-value = 6e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30250827Setaria viridisAvena sativa42.1527.0986.1794forward
CNT3016329Setaria viridisZea mays46.1920.5694.17103forward

Expression of CNT30678320

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MCPFRLYCSIRSASCVTRCKGSRWTCPHQVRQC*

>peptide 2 (46 aa)
HESTLGVANVAVELTVADTVHLGRDPADVPVQVVLLDKVSLLCDSV*

>peptide 3 (36 aa)
RKHPGCRKCSGRAHRCGHGSSGQRSSGCARSGCTAR*

Sequence

>CNT30678320
CACGAAAGCACCCTGGGTGTCGCAAATGTAGCGGTAGAGCTCACCGTTGCGGACACGGTTCATCTGGGCAGAGATCCAGCGGATGTGCCCGTTCAGGTTG
TACTGCTCGATAAGGTCAGCCTCTTGTGTGACTCGGTGTAAGGGAAGTAGATGGACATGTCCGCACCAGGTGAGACAATGTTGAACTTCGGGTCAAACAC
ATCAATACCGTGGACAACACGGT